Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3317 ATGGCAAACAATGACACACCTTCACCATTATTGCtgccaccatcatcaccaccaccaacatcgcCACTATTACTGTTGCCATCACTTACCCTTGCTATCCCCACTAAGTTAGATGTCCCTCCCCACGAACCAAACGAGCAAATGCAACAACAACTAGCTATAGTTGCACTTATTGGGAGGCTTAGAGGGAGGCCTCCTGGCTCAAAGAATAAGCCCAAACTAGCCTTAAAATTTCCTATCCCAGCCACCTTCCTTTTGCAAGAAAAAGAGGACTTTCTCAAACCCATAGTCCTAAATATTCCTACCAGCATAGACCTTGTTGATGCCATCATCAACTTTGCTCGCAACCAAGATGTCAGCATTGTGGTGCACAATGCTTCGGGTCCCATCTCCGAAGTTATCCTTTGCAACCTTTTCGACCATTCCCGTGATATGTTCCTCCAAGGAAACTTGCACATGTTGTCTCTTTCAGGCTTTTACACTAAGGGCCTTTCACCTTCACCCCCTTCAAATGTTCCCTATTCCTTCTTCGCGATTCAAGTGACGAGAACAAGGGAACTCTTTGGCGACCTTGTTGGAGGCAAAGTTATTACTGTGGAACCTGTGCATGTCATGGCTTCTATCATCAAGAAGCATGAGTACCAGAAGGCAGTGCCTCCCTTTATCAATCCAAATGTTTAG 681 0.4317 MANNDTPSPLLLPPSSPPPTSPLLLLPSLTLAIPTKLDVPPHEPNEQMQQQLAIVALIGRLRGRPPGSKNKPKLALKFPIPATFLLQEKEDFLKPIVLNIPTSIDLVDAIINFARNQDVSIVVHNASGPISEVILCNLFDHSRDMFLQGNLHMLSLSGFYTKGLSPSPPSNVPYSFFAIQVTRTRELFGDLVGGKVITVEPVHVMASIIKKHEYQKAVPPFINPNV 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3317 226 ProSiteProfiles PPC domain profile profile. 90 226 IPR005175 -
Ssu6g3317 226 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 50 217 IPR014476 GO:0003680
Ssu6g3317 226 SUPERFAMILY AF0104/ALDC/Ptd012-like 93 216 - -
Ssu6g3317 226 Pfam Plants and Prokaryotes Conserved (PCC) domain 94 208 IPR005175 -
Ssu6g3317 226 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 50 217 - -
Ssu6g3317 226 Gene3D - 93 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3317 Ssu-Chr6 75077556 75078236 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3317 55 216 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 28.824 3.85e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3317 - - ccaj:109792018 176.022