Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3316 ATGGCAAACAATGGCAAATCTTCACAATtattaccaccaccatcatcaccagcactgacaccaccaccaccaccatcaccgccgCCATCACCTACCCTTTCTATTTCCGCTGAGTTAGATGTCCTTCACCACAAACCAAATGAGCAAATGCAACCACAACCAACTATGGTTGCACTTGCTAAGAGGCCTAGGGGGAGGCCACCTGGCTCAAAGAATAATCCAAAACCAGCCTTGGACTTTCTCAAACCCATAGTCCTAAATATTCCTGTCGGTATAGACATTGTCGATGCCATCATCAACTTTGCTCGCAAACGAGATGTTGACATCGTGGTGCACAATGCTTCGGGTCCCATCTCTAAAGTGACCCTTAGCAACCTTTTCAACCATTCCCATGATTTGTTCCTCCAAGGAAACTTACACATGTTGTCTCTCTCAGGCTTTTACACTAAGAGCCTTTCACCTTCACCCCCTTCCAATGTTCCCTATTCCTCCTTCGCAATTCAAGTCTCAAGGATAGGGGATCCTAAACTCTTTGGTGGCCTTGTTGGAGGCAAAGTTATTAGTTGTAGAACCTGTGCAGGTCATGGCTTCTATCATCAACAAGCATGA 609 0.4089 MANNGKSSQLLPPPSSPALTPPPPPSPPPSPTLSISAELDVLHHKPNEQMQPQPTMVALAKRPRGRPPGSKNNPKPALDFLKPIVLNIPVGIDIVDAIINFARKRDVDIVVHNASGPISKVTLSNLFNHSHDLFLQGNLHMLSLSGFYTKSLSPSPPSNVPYSSFAIQVSRIGDPKLFGGLVGGKVISCRTCAGHGFYHQQA 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3316 202 Gene3D - 81 194 - -
Ssu6g3316 202 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 186 - -
Ssu6g3316 202 MobiDBLite consensus disorder prediction 1 35 - -
Ssu6g3316 202 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 188 IPR014476 GO:0003680
Ssu6g3316 202 CDD DUF296 82 188 IPR005175 -
Ssu6g3316 202 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 192 IPR005175 -
Ssu6g3316 202 MobiDBLite consensus disorder prediction 14 32 - -
Ssu6g3316 202 ProSiteProfiles PPC domain profile profile. 78 202 IPR005175 -
Ssu6g3316 202 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 26 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3316 Ssu-Chr6 75062149 75062757 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3316 57 191 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.000 1.77e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3316 - - ccaj:109792018 182.956