Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3314 ATGGCAAACAATGTCCATGCACCCTCCCTTTCCCCACCATTTGAGAATGGATCCATAAGCAATAGTTCTACTAGCTTCTCCACCCTGTACAAGGACTCCGCTGTTGTTGCTGGTTTCAATAGTGGTCATTTATCCTTTGCTAACATCAATAGCAGTGACAAACTTTCACCATTATTACCGcgaccatcaccaccaccaccgccaccaccatcattgccgCCATCACCTTTCCTTGCTGTCCCTTTTGCCAAGAGGCCTAGGGGGAGGCCATCTGGCTCAAAGAAAAAGCCCGAGCCAACCATGGAGTTCCCTGTCCCATCCACCTTCATCTCAGGAGAAAGAGGGGACTTTCTCAAACCCATAGTCCTGATTGTTCCTGCTGGCATGGATATAGTTAATGCCATCATTAACTTTGGTCGTGATCGGGATGTTAGCATCTCAGTGCACCATGCTTCGGGTACCATCTCTGAAGTTAAACTTTCCAACCCTCTCTCCCCTTCTGATGATTTGTCCCTTCGGGAAAACTTGCACATGGTGTCTTTCTCGGGCTTTTACACCAACAGCTTTTCATCTTCGCCACCCAAGAACATTCCCTATTCCTTCTTCACAATTCAACTTTCAAGGGGAAAGCCTCCCCAACTTTTTGGTGGCCTTGCTGGAGGAAAGCTAATTGCCGCAGAACCTGTGAAGGTCATGGCTTCTATCATCAAGAAGCATGAGTACCACAAGATTCCTCTACCAGCAGCGCCACACGACCAACTTGGTGGTGGCCTTCACGACGTGACGGTGATGAAGGATATACGAGACTACCGCTTCTCTAGCCCTAGTGGTAGCATTTTGATGGATGCGAGAGGTCTCGCATGGGGAAGTTGA 873 0.4605 MANNVHAPSLSPPFENGSISNSSTSFSTLYKDSAVVAGFNSGHLSFANINSSDKLSPLLPRPSPPPPPPPSLPPSPFLAVPFAKRPRGRPSGSKKKPEPTMEFPVPSTFISGERGDFLKPIVLIVPAGMDIVNAIINFGRDRDVSISVHHASGTISEVKLSNPLSPSDDLSLRENLHMVSFSGFYTNSFSSSPPKNIPYSFFTIQLSRGKPPQLFGGLAGGKLIAAEPVKVMASIIKKHEYHKIPLPAAPHDQLGGGLHDVTVMKDIRDYRFSSPSGSILMDARGLAWGS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3314 290 MobiDBLite consensus disorder prediction 1 24 - -
Ssu6g3314 290 Pfam Plants and Prokaryotes Conserved (PCC) domain 119 235 IPR005175 -
Ssu6g3314 290 SUPERFAMILY AF0104/ALDC/Ptd012-like 118 249 - -
Ssu6g3314 290 Gene3D - 119 255 - -
Ssu6g3314 290 MobiDBLite consensus disorder prediction 55 106 - -
Ssu6g3314 290 CDD DUF296 119 233 IPR005175 -
Ssu6g3314 290 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 60 247 IPR014476 GO:0003680
Ssu6g3314 290 MobiDBLite consensus disorder prediction 58 80 - -
Ssu6g3314 290 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 60 247 - -
Ssu6g3314 290 ProSiteProfiles PPC domain profile profile. 115 262 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3314 Ssu-Chr6 75020310 75027090 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3314 79 260 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 31.915 8.12e-18 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3314 - - gmx:102666204 182.57