Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3304 ATGGGCAACTGTTGCTCAGGTGGTGCCAATGACCCAGAGAACAAGGGAGAATCCAatcaacaaaacaacaacaacaacaacaacgaagGTGCGAGTGCAACCAccccaccaccatcatcaaAGCCAAACCATCCTCCTTCCAAGCACTCGAAACCGGCCGCAATCGGCCCCGTGCTTGGAAGGCCAATGGAGGACGTGAGAAGCACTTACAGCATGGGGAAAGAGCTAGGGAGAGGCCAGTTTGGTGTGACACACTTGTGCACGCACAAGGGCACGGGGAAGCAATATGCATGCAAAACCATAGCCAAGAGAAAGCTTGTGAACAAGGAGGATATAGAGGACGTTAAGAGGGAGGTGCAAATCATGCACCACCTCTCGGGGCAGCGTAACATCGTGGAACTTGTTAATGTGTATGAGGACAAGCAATCTGTTCATTTGGTGATGGAGTTGTGTGCCGGGGGTGAGCTCTTTGATCGCATCATTGCCAAGGGACACTACACTGAGCGTGCTGCGGCTTCCTTGTTGAGAACCATAGTGCAGATTGTCCACACGTGCCATTCCATGGGGGTCATTCATAGGGATCTTAAGCCTGAGAATTTCCTTCTGTTGAACAAGGATGAGAATGCACCCCTCAAGGCCACTGATTTCGGTCTCTCAGTTTTTTACAAGCAAGGAGAGATGTTTAAAGACATTGTTGGCAGTGCATATTACATTGCACCTGAGGTCTTGAAGAGGAAATATGGGCCAGAAATTGACATATGGAGTATTGGTGTCATGTTATATATTCTTCTATGCGGTGTTCCTCCATTTTCGGCAGAATCCGAAAATGGGATATTCAATGCAATCCTACGAGGCTATATTGACTTTACAAGCGATCCATGGCCATCCATTTCACCTGCAGCAAAAGATCTTGTAAGGAAAATGTTGAATTCGGATCCCAGGCAGAGGCTGACGGCCTACGAAGTTCTGAATCACCCGTGGATCAAGGAGGATGGAGAAGCACCAGATACACCTCTTGACAACGCAGTGCTGAATAGGCTCAAACAGTTCAGAGCAATGAACGAATTCAAGAAAGTTGCTCTAAGGGTCATCGCGGGCTGCCTATCAGAGGAAGAAATCATGGGATTGAAACAGATGTTCAAGGGGATGGACACTGACAACAGCGGAACCATTACAATTGAAGAGCTCAAGCAAGGGCTTGCAAAACAAGGGACTAAGCTAACAGAACAGGAAGTTAAGCAATTAATGGAAGCGGCAGATGCCGATGGCAATGGAACCATAGATTACGATGAATTCATCACAGCAACAATGCACATGAACCGAATGAACAAAGAAGATCGTCTTTATACTGCCTTCCAATACTTTGATAAAGATAACAGcggGTACATTTCCATTGAAGAACTAGAGCAGGCTCTCCTTGAGTTTAACATGCACGACGGCAGAGACATCAAGGAAATCATTTCAGAAATTGATGCAGATAATATGCTGATGAGTGAAATATCAAGGGGTATGGTGCATGGTAGCTGTTTGGTTGGAACTGGGGATATATGTGAGGAATGGATCATCGTGGAAAACAAACAAGAATAG 1587 0.4468 MGNCCSGGANDPENKGESNQQNNNNNNNEGASATTPPPSSKPNHPPSKHSKPAAIGPVLGRPMEDVRSTYSMGKELGRGQFGVTHLCTHKGTGKQYACKTIAKRKLVNKEDIEDVKREVQIMHHLSGQRNIVELVNVYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTCHSMGVIHRDLKPENFLLLNKDENAPLKATDFGLSVFYKQGEMFKDIVGSAYYIAPEVLKRKYGPEIDIWSIGVMLYILLCGVPPFSAESENGIFNAILRGYIDFTSDPWPSISPAAKDLVRKMLNSDPRQRLTAYEVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMNEFKKVALRVIAGCLSEEEIMGLKQMFKGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMHMNRMNKEDRLYTAFQYFDKDNSGYISIEELEQALLEFNMHDGRDIKEIISEIDADNMLMSEISRGMVHGSCLVGTGDICEEWIIVENKQE 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3304 528 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 17 494 - -
Ssu6g3304 528 Pfam EF-hand domain 448 473 IPR002048 GO:0005509
Ssu6g3304 528 Gene3D - 346 494 - -
Ssu6g3304 528 Gene3D - 369 437 - -
Ssu6g3304 528 ProSitePatterns EF-hand calcium-binding domain. 456 468 IPR018247 -
Ssu6g3304 528 ProSiteProfiles Protein kinase domain profile. 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3304 528 SUPERFAMILY Protein kinase-like (PK-like) 47 353 IPR011009 -
Ssu6g3304 528 MobiDBLite consensus disorder prediction 12 37 - -
Ssu6g3304 528 Pfam Protein kinase domain 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3304 528 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Ssu6g3304 528 SUPERFAMILY EF-hand 368 494 IPR011992 -
Ssu6g3304 528 CDD EFh 376 435 IPR002048 GO:0005509
Ssu6g3304 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Ssu6g3304 528 CDD EFh_PI-PLC 376 499 - -
Ssu6g3304 528 Gene3D Transferase(Phosphotransferase) domain 1 156 336 - -
Ssu6g3304 528 SMART efh_1 375 403 IPR002048 GO:0005509
Ssu6g3304 528 SMART efh_1 447 475 IPR002048 GO:0005509
Ssu6g3304 528 SMART efh_1 411 439 IPR002048 GO:0005509
Ssu6g3304 528 ProSiteProfiles EF-hand calcium-binding domain profile. 371 406 IPR002048 GO:0005509
Ssu6g3304 528 PANTHER SERINE/THREONINE-PROTEIN KINASE 17 494 - -
Ssu6g3304 528 Pfam EF-hand domain pair 376 436 IPR002048 GO:0005509
Ssu6g3304 528 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
Ssu6g3304 528 ProSitePatterns EF-hand calcium-binding domain. 384 396 IPR018247 -
Ssu6g3304 528 MobiDBLite consensus disorder prediction 1 61 - -
Ssu6g3304 528 SMART serkin_6 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3304 528 CDD STKc_CAMK 70 327 - -
Ssu6g3304 528 Gene3D Phosphorylase Kinase; domain 1 72 155 - -
Ssu6g3304 528 ProSitePatterns Protein kinases ATP-binding region signature. 76 103 IPR017441 GO:0005524
Ssu6g3304 528 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3304 Ssu-Chr6 74878485 74881943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3304 1 494 EF-hand Containing Proteins AT5G12180 80.361 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu6g3304 Pkinase 3.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3304 K13412 - gmx:100820422 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3304 6 74878485 74881943 Ssu6g3304 6 74878485 74881943 ECH
Ssu9g0711 9 31831540 31835732 Ssu6g3304 6 74878485 74881943 PCT