Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3297 ATGGCTTTCACACTAGACAGGTGTGAAGATAGCATTGTGTTCACTATGGAGTCCCAGAAGTCAGTGCCTGCTCCCTTCCTGACAAAGACATACCAACTTGTTGATGACCCTTGCACTGACCACATTGTGTCTTGGGGTGATGATGAAACTACATTTGTTGTGAGGAGGCCCCCAGAGTTTGCTAGAGATCTTCTTCCCAACTATTTCAAGCACAACAACTTCTCAAGCTTTGTTAGGCAGCTAAATACCTATGGTTTCAAGAAAGTAGCTGCTGATAGGTGGGAGTTTGCAAATGAATACTTCAGAAAAGGAGCTAAGCACCTTCTATGTGAAATCCACAGGAAAAAAACCCCTCACCACTATCAACAACACTACCATATGCATGACCAACCACAACAACTTCTTCAGCCAGATGAAAATCTGTGTTGGATTGATACTCCTCCACTACCATCTCCTAAGCCAGACACTGATATCCTAACAGCACTTTCTGAGGACAACCAAAGACTGAGGAGAAAGAACTTCATGCTCTTATCAGAACTCACTCACATGAAGAATCTATACAATGACATCATATATTTCATCCAAAACCATGTAAGTCCTGCTTCCTATGAACAAAGAAGTAGCAACAGTGCTATTTTGAAGCTGGTAGAATTGGATTTATCACCTCAATCACCAAATGTTATTAAACCAGCTAAGAGTTGTATAATGGAGAAGTCTTTGATAACTTCTAGTGAGGAGCCTAATAGTTCTGTGAAGCTCTTTGGGGTCCCTCTTTGTGGCAAAAAGAGATTGCACCCAGGTAACCTTGATCAACAAAAATAG 822 0.4136 MAFTLDRCEDSIVFTMESQKSVPAPFLTKTYQLVDDPCTDHIVSWGDDETTFVVRRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVAADRWEFANEYFRKGAKHLLCEIHRKKTPHHYQQHYHMHDQPQQLLQPDENLCWIDTPPLPSPKPDTDILTALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHVSPASYEQRSSNSAILKLVELDLSPQSPNVIKPAKSCIMEKSLITSSEEPNSSVKLFGVPLCGKKRLHPGNLDQQK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3297 273 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 263 IPR027725 -
Ssu6g3297 273 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Ssu6g3297 273 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu6g3297 273 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu6g3297 273 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu6g3297 273 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu6g3297 273 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu6g3297 273 Gene3D - 18 117 IPR036388 -
Ssu6g3297 273 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4D 17 263 - -
Ssu6g3297 273 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3297 Ssu-Chr6 74840344 74841522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3297 10 265 HSF AT1G46264 49.835 1.65e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu6g3297 HSF_DNA-bind 4.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3297 K09419 - gmx:100776060 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3297 6 74840344 74841522 Ssu6g3297 6 74840344 74841522 ECH
Ssu9g0704 9 31598889 31600332 Ssu6g3297 6 74840344 74841522 PCT