Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3288 ATGCTCCCGAAATTTGAACACGTTTTCCACCAGCATTACATCAATGCATGGTTACCCTCTCGCATGACTTGTCCCATTTGTCGTCAGAACCTCACGACGTCGGATGATCTACTCGACGTTGATATCCACACCACCAATGTCCCAACGGAACATCAGGAACTAGGTACAGAGTCAGAGGTGGGGATTACTCCTCCACGTGAATCGTGGAGGCTTGGAAGTATGGTGGGACCCGAGGAGGACGTTAGCGGGGGTGGACAGGTTCACTCTCAGGTTGGTGCTGTCCACTTATTAGAATGTCGTTTTGCACCCGTTTTGTCTCTTCTTCTCATCACAATAAACTGCTAG 345 0.4957 MLPKFEHVFHQHYINAWLPSRMTCPICRQNLTTSDDLLDVDIHTTNVPTEHQELGTESEVGITPPRESWRLGSMVGPEEDVSGGGQVHSQVGAVHLLECRFAPVLSLLLITINC 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3288 114 SUPERFAMILY RING/U-box 7 43 - -
Ssu6g3288 114 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 4 33 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Ssu6g3288 114 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 35 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3288 Ssu-Chr6 74710448 74710864 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3288 1 32 Rapid Response to Elicitors AT3G05200 59.375 8.54e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3288 K10664 - gmx:100804862 81.6481