Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3287 ATGGTGGCAATATGTGGAGGTTGTATTTGCTGCTACAAACACGTTTCTGGGTGTGCTCTGTTGGTCTTGGGGAGGGTTGACtatggttttttctttttcagcgTGGGTGAAAGTGGTTTGTCCGACCGTGGCACCGGCCCAGACTTGGTGAATAAATGTTATTCAAAGGGGAATCAAGTTTTACGATTGCATGCATGGACTGCAATCAAGGTGAGTGAGATGCTGGGAAATGTCAATACAAGTAGTGCTCTTTCAGCTTTTGAAAAGATGGAAGAGCAAGGTGAGAATAAGCAAAAGAACGTTGGTGTTGAAGGAAGAAACAGAAGGGTGCTTCAGGATATTGGGAATCTTGTGGCTAAACAAGCAGACCCTGGCGCTAATGTGTCTAAGCGTGTCACGAggaACTTTTGTGCTCAACTATTGGCTAATGCACAAGCCGCAGCAGAGAAGAACAAGAAGTCCAGCACTGAAGGAGTAGAGAACGGCGCAGTGGTAGCAACTGATGGGGTTAGTGTTGGGAATTTTGTTGCCACAACAAATGTGGAACCTGCTCAGAAGGCAAAAGAAGAACCTGAAGTAATTGTTATTAGCTCTGATGATGACTCGgaagaagagaaggagaagCAATCTGTTAAAGGAAGAAAGGCAAGGGAAAAGTCTGCCAGGAAAAATGCCAAGGCCTTCAGTGCAGTCCTCTCAGCTCGAAGCAAGGCTGCTTCTGGACTCCCAAGGGATTTGGTGGTGAACATTGATTCAACTGACATGGACAATGAATTGGCAGCTGCAGAGTACATTGATGATATCTACAAATATTACAAAGACACTGAAGAGGATGCTTGTGTGCATGATTACATGGGTTCACAGCCAGATATTAATGCCAAGATGAGATCAATTCTTGTGGACTGGTTGATAGAAGTGCATAGGAAATTTGAGCTCATGCCAGAAACTCTCTATTTGGCCGTGAACATCGTTGATCGGTTCCTGTCCGTGAAGGCTGTGCCTAGAAGGGAACTTCAGCTGGTTGGCATCAGCTCAATGCTGATAGCCTCAAAATATGAAGAGATATGGGCACCAGAGGTTAATGACTTTGTATGCATTTCAGACAATGCTTATGTTAGTGAACAAGTGCTGGTGATGGAGAAAACGATCCTGAGAAAGCTTGAATGGTACTTAACTGTTCCGACACCCTATGTCTTCTTGGTTCGGTATATCAAAGCCTCTACTCTATCTGACAAAGAGATGGAAAACATGGTGTTTTTCCTTGCTGAACTTGGTATGATGCACTATCCTATTGTAATCTTGTACTGCCCTTCTCTGATTGCTGCTTCTGCTGTATTCGCGGCTCGATGTACTCTTGGAAGGAGCCCTTTCTGGACAAGGACATTGAAGCACTACACAGGCTACTCTGAGGAGCAACTGAGGGATTGTGCCAAAATCATGGTCAACCTTCATTCTGCTGCTCCAGAAAGCAAGCTTAGGGCAGTTTACAAGAAATTCTGTAGCTCGGATAGCAGTGCTGTTGCTCTTCTTACTCCAGCAAAGAACTTGTCAGCACTGTCTTGA 1563 0.437 MVAICGGCICCYKHVSGCALLVLGRVDYGFFFFSVGESGLSDRGTGPDLVNKCYSKGNQVLRLHAWTAIKVSEMLGNVNTSSALSAFEKMEEQGENKQKNVGVEGRNRRVLQDIGNLVAKQADPGANVSKRVTRNFCAQLLANAQAAAEKNKKSSTEGVENGAVVATDGVSVGNFVATTNVEPAQKAKEEPEVIVISSDDDSEEEKEKQSVKGRKAREKSARKNAKAFSAVLSARSKAASGLPRDLVVNIDSTDMDNELAAAEYIDDIYKYYKDTEEDACVHDYMGSQPDINAKMRSILVDWLIEVHRKFELMPETLYLAVNIVDRFLSVKAVPRRELQLVGISSMLIASKYEEIWAPEVNDFVCISDNAYVSEQVLVMEKTILRKLEWYLTVPTPYVFLVRYIKASTLSDKEMENMVFFLAELGMMHYPIVILYCPSLIAASAVFAARCTLGRSPFWTRTLKHYTGYSEEQLRDCAKIMVNLHSAAPESKLRAVYKKFCSSDSSAVALLTPAKNLSALS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3287 520 Gene3D - 281 392 - -
Ssu6g3287 520 CDD CYCLIN 392 481 IPR013763 -
Ssu6g3287 520 PIRSF Cyclin_A_B_D_E 68 520 IPR039361 -
Ssu6g3287 520 PANTHER CYCLINS 99 515 IPR039361 -
Ssu6g3287 520 SUPERFAMILY Cyclin-like 256 391 IPR036915 -
Ssu6g3287 520 SMART Cyclin_C_2 394 513 IPR004367 -
Ssu6g3287 520 CDD CYCLIN 295 384 IPR013763 -
Ssu6g3287 520 MobiDBLite consensus disorder prediction 183 219 - -
Ssu6g3287 520 Pfam Cyclin, C-terminal domain 394 511 IPR004367 -
Ssu6g3287 520 SMART cyclin_7 398 482 IPR013763 -
Ssu6g3287 520 SMART cyclin_7 301 385 IPR013763 -
Ssu6g3287 520 Gene3D - 267 508 - -
Ssu6g3287 520 SUPERFAMILY Cyclin-like 393 514 IPR036915 -
Ssu6g3287 520 MobiDBLite consensus disorder prediction 185 214 - -
Ssu6g3287 520 ProSitePatterns Cyclins signature. 296 327 IPR006671 -
Ssu6g3287 520 Pfam Cyclin, N-terminal domain 267 391 IPR006671 -
Ssu6g3287 520 PANTHER CYCLIN-B1-4 99 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3287 Ssu-Chr6 74688738 74704659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3287 94 517 Core Cell Cycle Gene Families AT2G26760 52.706 3.32e-145 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3287 K21777 - gmx:547782 676.781