Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3274 ATGAGGAAGAAGCTAGATACTCGTTTCCCTGCTGCtaggattaagaaaattatgcaAGCTGATGAGGATGTAGGAAAGATTGCAATGGCTGTGCCTCTTCTAGTTTCTAAAGCACTAGAGCTATTTCTGCAAGATTTGTGTGATCGAACATATGAGATAACTTTGAGGAGGGGGGCAAAGACTATGAATGCTTTTCATTTAAAACAGTGTGTGCAGACTTTTAATGTCTTTGATTTTCTGAAAGATATTGTCAGCAAGGTTCCTGATTTAGGTGGTTCTGTTGCAACTGGTGATGACCATACTGTCACTAAGAGGAGgaaAGTTGCTGATGCTGAAGATGATGACAATGACAGCGACGAGGAGcccaaaagaaataagaagCCAGAGGCCAGACATACCAGCGGCAGAGGAAGGGGTAGGGGCAGGGGTAGGGGTCATGGCCGTGGAATTAGAACTGTAGATCAAGAGATGAGTTCACCTGCCAAGTTTGAAGATGATTCTCATGTATTGAAGCAAAATGACAACCAGACTCGAAGCAATGAAAGCATGGAAAATGTGTCAGAACCTGAAGAAGTGAAGCAGAATTTTCCAGTAAGCAAACCGGCCAAAGTGTCCATTCgaaattttgacttaaatatgaaCCCAGATGAGAACATGATGGATTCATTAGCCTCACCAACTTCTGTCCCAACTAGTTCATCTGCAAAATCAATGTCAGAAGAGAAGCATGAGGAATACCCTGGATGGTCCTTGTCTGATATGGAAAAAATGACCATTGATCCTATGCAACTAGCTAACTTAAATGGAGGGattgatgaagatgaagagGATTATGATGAAGAAATGTAG 849 0.391 MRKKLDTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSKVPDLGGSVATGDDHTVTKRRKVADAEDDDNDSDEEPKRNKKPEARHTSGRGRGRGRGRGHGRGIRTVDQEMSSPAKFEDDSHVLKQNDNQTRSNESMENVSEPEEVKQNFPVSKPAKVSIRNFDLNMNPDENMMDSLASPTSVPTSSSAKSMSEEKHEEYPGWSLSDMEKMTIDPMQLANLNGGIDEDEEDYDEEM 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3274 282 MobiDBLite consensus disorder prediction 218 236 - -
Ssu6g3274 282 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 281 - -
Ssu6g3274 282 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Ssu6g3274 282 MobiDBLite consensus disorder prediction 212 252 - -
Ssu6g3274 282 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Ssu6g3274 282 MobiDBLite consensus disorder prediction 158 172 - -
Ssu6g3274 282 PANTHER HISTONE SUPERFAMILY PROTEIN 1 281 - -
Ssu6g3274 282 MobiDBLite consensus disorder prediction 119 136 - -
Ssu6g3274 282 MobiDBLite consensus disorder prediction 90 199 - -
Ssu6g3274 282 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3274 Ssu-Chr6 74445893 74449507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3274 1 129 CCAAT-HAP5 Transcription Factor Family AT3G12480 68.889 6.80e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Ssu6g3274 CBFD_NFYB_HMF 2.2e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3274 K21752 - gmx:100814800 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3274 6 74445893 74449507 Ssu6g3274 6 74445893 74449507 ECH