Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3272 ATGATGTCAACTGGAGCAACACACTGGTGTTATGCATGCAGACAGCCAATTGTGCTTGATGGGACAGATGTTTGCCCTTACTGTGATGAAGGATTTATACAAGAACTTGATGAGTTGCGAGGAAGTGCGCCCCACCATACCTTTTCATCACAATCGGGAGAGTTCCATCAAACGCCTGACATTATTGAGGCTATACATGCTTTTGTGGGGCAGAGAGGTTCTGACCAGAGATTTGGGCTTATGGATGCCGTTGATAATTTCATGAGGCATAGAATGGCTGGAAGAAACTTGAACTTTGATGTGAGAGGGAGGTCTGGTTCTTTCCCAGTTCCTGAACAGAGTTGGGGTGTTTTTAGTTCTGgtccttatttaatatttcatggTCAAGTTCCTGGATTCACCTTGGCTAACGGCAGCCCAAGAGGTGGTCCTAGGCGTGTAGATTTTGGTGACTACATTATGGGTAATGGACTGGAAGAACTTATTGAGCAACTCACCATGAATGATCGGCGTGGTCCCCCCCCAGCCACGCGATCTTCAATTGATGCAATGCCTATTATTAAGATAACACAGGCGCATCTTCGCTCGGATTCACACTGTCCggtttgtaaagaaaaatttgaattggCCACTGAAGCCAGAGAGATGCCATGCAACCATATTTACCATTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCTGTTTGCCGTGTTGAGCTGCCACCTCAAGGACAGGTTAGTTCCCGTGGTAGTCGAAGTTGGGGAGGAAGGAATGCCAGCAACAGCAACAGTGGCAATGATAGCTCCAGGAGCAGGGAGAATAGCCATCAGAACCATGGAAGGAGAAATCCACTGTCATTTTTGTGGCCATTCCGCTCGTCTAGTTCAAACAATAATCATTATGCCGAGACTGGGGGAAGCAGCTCTTCAACCACTCCTGACCAGAAATAA 963 0.4507 MMSTGATHWCYACRQPIVLDGTDVCPYCDEGFIQELDELRGSAPHHTFSSQSGEFHQTPDIIEAIHAFVGQRGSDQRFGLMDAVDNFMRHRMAGRNLNFDVRGRSGSFPVPEQSWGVFSSGPYLIFHGQVPGFTLANGSPRGGPRRVDFGDYIMGNGLEELIEQLTMNDRRGPPPATRSSIDAMPIIKITQAHLRSDSHCPVCKEKFELATEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGQVSSRGSRSWGGRNASNSNSGNDSSRSRENSHQNHGRRNPLSFLWPFRSSSSNNNHYAETGGSSSSTTPDQK 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3272 320 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Ssu6g3272 320 Pfam zinc-ribbon 7 36 IPR039525 GO:0061630
Ssu6g3272 320 Pfam Ring finger domain 199 241 IPR001841 -
Ssu6g3272 320 PANTHER OS03G0351800 PROTEIN 2 315 - -
Ssu6g3272 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 315 - -
Ssu6g3272 320 MobiDBLite consensus disorder prediction 301 320 - -
Ssu6g3272 320 MobiDBLite consensus disorder prediction 248 295 - -
Ssu6g3272 320 CDD RING-H2_RNF126_like 200 241 - -
Ssu6g3272 320 SMART ring_2 200 240 IPR001841 -
Ssu6g3272 320 MobiDBLite consensus disorder prediction 248 275 - -
Ssu6g3272 320 SUPERFAMILY RING/U-box 180 247 - -
Ssu6g3272 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 247 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3272 Ssu-Chr6 74420216 74421178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3272 144 256 C3H Transcription Factor Family AT5G01980 43.478 8.50e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3272 K11982 - gmx:100813674 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0658 9 29972422 29973327 Ssu6g3272 6 74420216 74421178 PCT