Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3271 ATGGCGGTCACCTTCTCAGATCTACACACCGAAGAGGGCCTCAAATCCCTCGATCAATACCTTTCTGGGAAAACCTATATTTCTGGGGATCAATTGACAAAGGATGATATCAAGGTGTATGCAGCTGTTGTGGAAAAGCCAGGAGATTCTTTTCCCAATGCTGCCAAGTGGTATCATGTTGTCTCTTCTCATCTTGCTCCAAGCTTCCCTGGGAACGCTCAAGGGGTAAGATTCAGTGGCAAAGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGGCTGCTACTgctgaagatgatgatgatctTGATCTCTTTGGTGATGAGACAGAGGAGGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGcctgccaaaaaaaaagaaaGTGGCAAGTCTTCTGTCCTGCTTGATGTTAAGCCTTGGGACGATGAGACCGACATGAAGAAGCTGGAAGAGGCTGTCCGTGGTGTTGAGATGCCTGGTTTATTGTGGGGAGCATCCAAACTGGTTCCAGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGACCATTGTTGATGACCTTGTATCTGTGGACTCCCTCATTGAGGAACATCTGACAGTTGAGCCATGCAATGAGTACATCCAAAGCTGTGACATTGTTGCATTCaacaaaatttaa 669 0.4454 MAVTFSDLHTEEGLKSLDQYLSGKTYISGDQLTKDDIKVYAAVVEKPGDSFPNAAKWYHVVSSHLAPSFPGNAQGVRFSGKAAPAEAAPAKAAATAEDDDDLDLFGDETEEDKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRGVEMPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEEHLTVEPCNEYIQSCDIVAFNKI 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3271 222 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 211 222 IPR001326 GO:0003746|GO:0005853|GO:0006414
Ssu6g3271 222 SUPERFAMILY eEF-1beta-like 130 222 IPR036219 -
Ssu6g3271 222 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 98 106 IPR001326 GO:0003746|GO:0005853|GO:0006414
Ssu6g3271 222 Gene3D - 126 222 IPR014717 -
Ssu6g3271 222 PANTHER ELONGATION FACTOR 1-BETA 2 1 222 - -
Ssu6g3271 222 CDD EF1B 131 222 IPR014038 GO:0003746|GO:0006414
Ssu6g3271 222 MobiDBLite consensus disorder prediction 110 135 - -
Ssu6g3271 222 Pfam EF-1 guanine nucleotide exchange domain 135 222 IPR014038 GO:0003746|GO:0006414
Ssu6g3271 222 Gene3D - 5 63 - -
Ssu6g3271 222 SUPERFAMILY GST C-terminal domain-like 10 65 IPR036282 -
Ssu6g3271 222 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 222 - -
Ssu6g3271 222 SMART EF1_GNE_2 133 222 IPR014038 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3271 Ssu-Chr6 74409454 74412396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3271 1 222 Eukaryotic Initiation Factors Gene Family AT5G12110 75.877 8.29e-110 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3271 K03232 - gmx:100500082 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0657 9 29934988 29938800 Ssu6g3271 6 74409454 74412396 PCT