Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3269 ATGATTTCAGTTATTACTGCTGGTGTGGTTCTGTTGTTCGTCAGAGTCACAATTTGTATCATGTCCTCATTATCACATGGAGAAAGTAGTGGCGATGATCAGTCGGTAGAAGATAGTTTTTTAAAGAAAGGGCCATGGACAGCAGAAGAGGATGCAATCTTGGCAGCATACGTGACAAATAACGGAGTGGGAAATTGGAATGTAGTGCGAAAGCACACTGGACTAGCTCGTTGTGGGAAAAGCTGCCGTTTAAGGTGGACAAATCATCTAAGACCAGATTTGAAAAGAGGTGCATTTACCACCGAGGAACAACGTAAAATCATTGAACTTCATGCTTTAATGGGAAATAAATGGGCCAGGATGGCACAGGAGTTGCCTGGACGCACAGACAATGAGATAAAGAATTTCTGGAATACAAGACTAAAGAAAAGGAAACGAGCTGGCTTACCACTCTACCCTGATGACATAAAACCAGTGTTGAATATTGACAGCCCACAAAGTAGTCTAAATGCTTCCACCCAGCATGCTGATGACTCACAAGCAGGCACATCATCTAATGTACCAGAATTAGTGTTCAACAATTACAAGCTCATCAGTCAAAAACATCCATTGTATATACCACCAATTTCTGGCATACCTGAAAACAGCACCTTTGAACAAGAAGGTTCAGGTAACCAAATTATGCATCCCCCGAAGCAGCTTCATGATTCAGATAAGTTGTACACTAGTTTGGACAGTAATTGTGTAACACCAGCACCAATTGATTAtATTCAGTTTCAGGGTGATTCAAGTGACCCTCCCTCAATATCAGAGCTGCCTCCACTGCCATCAATTGATGATACACTGAAAGAGGATCCTCCGGCTGAGATTCGATACTATGAACCAGTTTCTCCACACAGCAATGGGTATTTGGAATCGATGCTTAACCCACCAAAGATTTTAGAAGGATCAGATCATTGTTCCATGCAGGGGGagtcaaatttagaaaacaaagaaaattcgGACCAGAGATACCTTGCAAATCAACATGCTTTATATGACTTTAGTTGGTTAGAGAATTATGACAAGGATCAATATGCTCTTAAGGATACTTTATTCAGCATTATCCACCCCTTCATCCACACGAATACTAATTCTTAA 1140 0.4026 MISVITAGVVLLFVRVTICIMSSLSHGESSGDDQSVEDSFLKKGPWTAEEDAILAAYVTNNGVGNWNVVRKHTGLARCGKSCRLRWTNHLRPDLKRGAFTTEEQRKIIELHALMGNKWARMAQELPGRTDNEIKNFWNTRLKKRKRAGLPLYPDDIKPVLNIDSPQSSLNASTQHADDSQAGTSSNVPELVFNNYKLISQKHPLYIPPISGIPENSTFEQEGSGNQIMHPPKQLHDSDKLYTSLDSNCVTPAPIDYIQFQGDSSDPPSISELPPLPSIDDTLKEDPPAEIRYYEPVSPHSNGYLESMLNPPKILEGSDHCSMQGESNLENKENSDQRYLANQHALYDFSWLENYDKDQYALKDTLFSIIHPFIHTNTNS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3269 379 Pfam Myb-like DNA-binding domain 96 139 IPR001005 -
Ssu6g3269 379 Pfam Myb-like DNA-binding domain 43 90 IPR001005 -
Ssu6g3269 379 Gene3D - 98 144 - -
Ssu6g3269 379 SUPERFAMILY Homeodomain-like 42 137 IPR009057 -
Ssu6g3269 379 PANTHER MYB DNA-BINDING DOMAIN PROTEIN 29 234 - -
Ssu6g3269 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 90 IPR017930 -
Ssu6g3269 379 ProSiteProfiles Myb-like domain profile. 38 90 IPR001005 -
Ssu6g3269 379 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Ssu6g3269 379 SMART sant 42 92 IPR001005 -
Ssu6g3269 379 SMART sant 95 143 IPR001005 -
Ssu6g3269 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Ssu6g3269 379 Gene3D - 42 95 - -
Ssu6g3269 379 CDD SANT 98 141 IPR001005 -
Ssu6g3269 379 CDD SANT 45 90 IPR001005 -
Ssu6g3269 379 MobiDBLite consensus disorder prediction 163 185 - -
Ssu6g3269 379 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 29 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3269 Ssu-Chr6 74385757 74388066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3269 21 197 MYB Transcription Factor Family AT2G26960 53.889 5.07e-64 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g3269 Myb_DNA-binding 3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3269 K09422 - ccaj:109791291 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3269 6 74385757 74388066 Ssu6g3269 6 74385757 74388066 ECH
Ssu9g0654 9 29809128 29815231 Ssu6g3269 6 74385757 74388066 PCT