Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3264 ATGGCTATGGCAGCCCCAGGGCAACTGAACGTGAATGAATCACCCACTCGGGGATCCAGAAGCGTTGATTGTTTCGAGAAGTTGGAACAAATTGGCGAGGGCACATATGGGTTTGTTTCAATTTGTGTACTGCTAAAGCTTTACTTTCCTATAACTGCTATACGAGAAATCAAAATTCTAAAGAAACTACACCACGAAAATGTGATCAAGCTGAAAGAAATTGTGACTTCTCCAGGTACCCTTTTTCAAGAACTAAATGTCCTTTATGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTAACAGGTCTTGCTGACCGACCTGGGATGAGATTTACAGTTCCCCAAATTAAGTGTTACATGAGACAGCTTTTGACGGGGCTTCACTATTGTCATGTAAATCAAGTACTTCATCGTGATATCAAAGGCTCAAATCTTCTTATAGACAATGAAGGAAATCTTAAGCTTGCAGATTTTGGACTGGCACGATCATTTTGTAATGACCAAAATGCAAATCTTACAAATCGTGTCATTACATTATGGTACAGgcCACCAAGGCAGATGAAAAGACGTTTGAGGGAAGTTTTCAGACATTTTGATCGTCATGCTCTGGAATTGTTGGAGAAGATGTTGACACTTGATCCGGCTCAGAGAATTACTGCAAAAGATGCACTTGATGCTGAGTATTTCTGGACAGATCCATTACCATGCGATCCCAAGAGGTAA 747 0.3989 MAMAAPGQLNVNESPTRGSRSVDCFEKLEQIGEGTYGFVSICVLLKLYFPITAIREIKILKKLHHENVIKLKEIVTSPGTLFQELNVLYGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFCNDQNANLTNRVITLWYRPPRQMKRRLREVFRHFDRHALELLEKMLTLDPAQRITAKDALDAEYFWTDPLPCDPKR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3264 248 Gene3D Phosphorylase Kinase; domain 1 43 105 - -
Ssu6g3264 248 SUPERFAMILY Protein kinase-like (PK-like) 20 245 IPR011009 -
Ssu6g3264 248 Gene3D Transferase(Phosphotransferase) domain 1 196 240 - -
Ssu6g3264 248 Pfam Protein kinase domain 51 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3264 248 PANTHER CYCLIN-DEPENDENT KINASE C-2 190 247 - -
Ssu6g3264 248 ProSiteProfiles Protein kinase domain profile. 25 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3264 248 SMART serkin_6 25 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3264 248 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 192 - -
Ssu6g3264 248 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Ssu6g3264 248 Gene3D Transferase(Phosphotransferase) domain 1 106 195 - -
Ssu6g3264 248 PANTHER CELL DIVISION PROTEIN KINASE 5 192 - -
Ssu6g3264 248 PANTHER CELL DIVISION PROTEIN KINASE 190 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3264 Ssu-Chr6 74325080 74329282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3264 189 247 Core Cell Cycle Gene Families AT5G10270 84.746 1.59e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Ssu6g3264 Pkinase 3.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3264 K08819 - gmx:100795971 327.405