Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3263 ATGGGAAACTGTTGCAGAAAACCAGTGGCTCATGTTTCCTCAAGTTTCTTTGGAAGCACAAAGTCTCAAAGTAAGACAAAGCAGAACTCAAATTCTCCTGAACGAAAAGCTCCTTTAAAAACTTCATCATCAAATGTTGACAAACCCATCTCCAATAACCTTAAGTCCTTCACCTTCAATGATCTAAAAGAGGCAACTAAGAACTTCAGGCAAGAAAATTTAATTGGAGAAGGAGGGTTTGGGTTTGTCTACAAGGGATGGATTGATGAGAACACCTGTGCTCCCACAAAACCAGGGACTGGAATTGTAGTGGCCATCAAGAAACTTAAACCAGAAAGCTTTCAAGGTCACAGGGAATGGCTCGCAGAAGTCAATTATCTAGGCCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTACTGCTCAGATGGTAAAAACAGGCTTCTTGTTTATGAGTTTATGCAGAAAGGAAGTTTGGAAAACCATTTATTCAGAAGAGGTGTTCAACCTATTCCCTGGATTACACGGATCAATATTGCTGTTGCTGTAGCAAGAGGATTAACATTTTTACATACCCTTGATGCAAATGTTATATATCGTGATTTAAAGGCTTCCAACGTCCTACTTGATTCGGATTTCAATGCAAAGCTTTCGGATTTTGGTTTGGCAAGAGATGGCCCTACTGGAGATAACACTCATGTTTCAACCAGAGTTATTGGAACTCATGGTTATGCTGCACCAGAGTATGTAGCAACAGGTCATTTGACCCCAAGGAGTGATGTATACAGCTTTGGAGTTGTGTTGTTAGAGTTACTAACAGGAAGGCGTGTAGTTGAAGATGAGAGACCTGGATTTTCAGAAGAAACACTGGTGGATTGGGCAAGGCCATTCCTGAGTGATAGCAGAGGAGTTTTGAGAATCATGGATACAAGGTTGGGTGGTCAATACTCCAAGAAAGGAGCACAAGCTGCAGCAGCACTTGTACTACACTGTCTAAATGCTGATCCCAAATATAGACCAACTATGGTAAATGTTCTAGCAGCATTGGATGCACTACATTCCTCAAATTCATTCCCAAGGACGCCAAAATCTGGAACTGAGAATCACACAACAAAGCATTCTTCTAGTCATTCCCACAAGTCAGCTACAAATAGTAACAAACTATGA 1170 0.4094 MGNCCRKPVAHVSSSFFGSTKSQSKTKQNSNSPERKAPLKTSSSNVDKPISNNLKSFTFNDLKEATKNFRQENLIGEGGFGFVYKGWIDENTCAPTKPGTGIVVAIKKLKPESFQGHREWLAEVNYLGQLHHENLVKLIGYCSDGKNRLLVYEFMQKGSLENHLFRRGVQPIPWITRINIAVAVARGLTFLHTLDANVIYRDLKASNVLLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTHGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRVVEDERPGFSEETLVDWARPFLSDSRGVLRIMDTRLGGQYSKKGAQAAAALVLHCLNADPKYRPTMVNVLAALDALHSSNSFPRTPKSGTENHTTKHSSSHSHKSATNSNKL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3263 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Ssu6g3263 389 Pfam Protein kinase domain 70 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3263 389 SMART serkin_6 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3263 389 MobiDBLite consensus disorder prediction 16 48 - -
Ssu6g3263 389 Gene3D Phosphorylase Kinase; domain 1 43 154 - -
Ssu6g3263 389 CDD STKc_IRAK 75 353 - -
Ssu6g3263 389 ProSiteProfiles Protein kinase domain profile. 69 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3263 389 SUPERFAMILY Protein kinase-like (PK-like) 45 350 IPR011009 -
Ssu6g3263 389 Gene3D Transferase(Phosphotransferase) domain 1 155 377 - -
Ssu6g3263 389 ProSitePatterns Protein kinases ATP-binding region signature. 75 108 IPR017441 GO:0005524
Ssu6g3263 389 PANTHER OS01G0588500 PROTEIN-RELATED 16 379 - -
Ssu6g3263 389 MobiDBLite consensus disorder prediction 357 389 - -
Ssu6g3263 389 PANTHER TYROSINE KINASE FAMILY PROTEIN 16 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3263 Ssu-Chr6 74318709 74322574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3263 29 356 Glycoside Hydrolase AT3G07070 49.552 8.18e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu6g3263 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3263 - - gmx:102664409 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0639 9 28940089 28943541 Ssu6g3263 6 74318709 74322574 PCT