Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3262 ATGAGTCAGCCTAAGATTAAGCGCCGAGTTGGTAAGTATGAGGTGGGGAGGACCATTGGTGAGGGTACATTTGCAAAGGTGAAATTTGCAAGGAACTCTGAGACAGGAGAGGCTGTGGCTCTTAAAATTCTTGACAAGGAGAAGGTGCTCAAGCACAAGATGGCTGAGCAGATCAGGAGAGAGGTAGCTACAATGAAATTAATCAAGCATCCAAATGTTGTTCGACTGTATgagGTCATGGGAAGCAAGacgaaaatatatattgttttggaGTTTGTAAACCATGGACGGATGAGTGAAAATGAAGCACGTAGATATTTCCAGCAGCTTATAAATGCTGTTGATTATTGCCATAGCAGGGGTGTCTACCACAGAGACCTAAAGCCAGAAAATTTGCTATTAGATGCTAATGGGAACCTTAAAGTTTCCGATTTTGGTTTGAGTGCCCTCTCCCAGCAAGTTAGGGATGATGGACTTCTCCATACTACATGTGGCACTCCAAATTATGTTGCTCCTGAGGTCCTTAACGATAGAGGCTATGATGGGGCAACTGCAGACTTGTGGTCATGTGGGGTGATTCTCTTTGTATTGGTTGCAGGTTACTTGCCTTTCGATGACCCTAATCTTATGAAcctgtataaaaaaATCTCAGCTGCTGAATTTACTTGCCCCCCATGGCTTTCTTTCAGTGCCAGGAAATTGATTACACGAATTTTGGATCCTGATCCTATGACTCGTATCACTATACCTGAGATTTTGGATGATGAATGGTTTAAGAAAGATTATAAGCCTCCAGTTTTTGAGGAGAATGGGGAAACAAACCTCGATGATGTGGAAGCTGTCTTTAAAGATTCCGAAGAGCACCATGTgacagagaagaaagaagagcaGCCTACAGCCATGAATGCGTTCGAGTTAATTTCCATGTCCAAAGGGCTGAACCTTGAAAACTTATTTGATATAGAGCAGGGATTTAAAAGGGAAACAAGATTCACCTCAAAGTCCCCTGCGGATGAGATAATCAACAAGATTGAGGAAGCTGCAAAACCTCTTGGCTTTGATGTGCAGAAGAAAAATTACAAGATGAGGCTTGCAAATGTGAAAGCTGGAAGGAAGGGAAACCTTAATGTTGCCACAGAGATATTTCAAGTGGCACCTTCTCTTCACATGGTTGAGGTACGGAAGGCAAAAGGAGATACATTGGAGTTCCATAAGTTCTACAAAAAACTTTCAACAAGCCTGGATGATGTTGTTTGGAAAACAGAAGATGATATGCAAATGCGAGGAACAAAGtga 1296 0.4051 MSQPKIKRRVGKYEVGRTIGEGTFAKVKFARNSETGEAVALKILDKEKVLKHKMAEQIRREVATMKLIKHPNVVRLYEVMGSKTKIYIVLEFVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDANGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLVAGYLPFDDPNLMNLYKKISAAEFTCPPWLSFSARKLITRILDPDPMTRITIPEILDDEWFKKDYKPPVFEENGETNLDDVEAVFKDSEEHHVTEKKEEQPTAMNAFELISMSKGLNLENLFDIEQGFKRETRFTSKSPADEIINKIEEAAKPLGFDVQKKNYKMRLANVKAGRKGNLNVATEIFQVAPSLHMVEVRKAKGDTLEFHKFYKKLSTSLDDVVWKTEDDMQMRGTK 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3262 431 Gene3D Kinase associated domain 1, KA1 295 420 - -
Ssu6g3262 431 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165
Ssu6g3262 431 Pfam Protein kinase domain 13 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3262 431 ProSiteProfiles Protein kinase domain profile. 13 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3262 431 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 2 422 - -
Ssu6g3262 431 PANTHER - 2 422 - -
Ssu6g3262 431 Gene3D Transferase(Phosphotransferase) domain 1 91 265 - -
Ssu6g3262 431 SUPERFAMILY Protein kinase-like (PK-like) 9 275 IPR011009 -
Ssu6g3262 431 Gene3D Phosphorylase Kinase; domain 1 4 90 - -
Ssu6g3262 431 CDD CIPK_C 302 411 - -
Ssu6g3262 431 SMART serkin_6 13 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3262 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Ssu6g3262 431 Pfam NAF domain 298 357 IPR004041 GO:0007165
Ssu6g3262 431 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3262 Ssu-Chr6 74255663 74261135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3262 5 401 CBL-interacting serine-threonine protein kinases AT2G26980 78.870 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu6g3262 Pkinase 1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3262 - - gmx:100794566 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0638 9 28903824 28910427 Ssu6g3262 6 74255663 74261135 PCT