Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3257 ATGGCCAAGAAACGAAAGCTCCGATCCTCCGACCCGGAACCCACTAAACCCGTCGAAGTCGAACCGCACCAACAAGACCAAGAGCCGGTCGAACCCAACCCCGAACCAACCCTCGAAGACCCCAACACCATGGCCCTCGACGAACCAACacaggaagaagaagaagaagaagaagaacaacaacTACCACAACAAAACcccgaagaagaagaagaggaggaagaccAACAAGAGCAGAAACCGGAAACCCTAGAAGACGACCAGCAGGAGCAGGAGCCCGAAACCCTAGAAGCTCCGAACCATGCAGAAGAGAACGGCGCCGAGGAAAAAGCGAACAACGACAACAACGAAGAGGAGGAGAACGAGGACCTCACCCTGGAAGAAGAGCCCGTGGAGAAGCTTCTGGAACCCTTCACGAAGGAGCAGCTGCACTCCCTCGTCAAGCAGGCCGTCGAGAAGTTTCCCGAATTCGTGGAGAGCGTCCGCCAGCTCGCCGACGTCGACCCCGCGCACCGCAAAATCTTCGTCCACGGCCTCGGCTGGGACGCCACCGCCGAGACCCTGACCGACGTGTTCGGAAAATACGGCGAGATCGAGGACTGCAAGGCCGTCACCGACAAGGTCTCCGGCAAATCCAAGGGTTACGCCTTCATTTTGTTCAAGCACAGGGACGACGCCCGCAAGGCGCTGAAGCACCCGCAGAAGAAGATCGGGAACCGCACCACCTCGTGCCAGTTGGCCTCCGCCGGCCCCGTTCCGGCCCCGCCGCCGAACGTGAACCCGGTGTCGGAGTACACCCAGAGGAAGATCTTTGTGAGCAATGTGAGCGCGGAGATTGACCCTCAGAAACTGCTTGAGTTCTTCAAGCAGTTTGGGGAGGTAGAGGATGGTCCTCTTGGTCTTGATAAGAACACCGGGAAACCTAAGGGTTTCGCACTGTTTGTGTATAAGTCTGTGGAGAGTTCTAAGAAGGCTTTGGAAGAGCCTCATAAGAACTTCGAGGGGCATACATTGTATTGCCAGAAGGCTGTTGATGGTCCTAAGGGGAGCAAGGGGTATCATCAGTATCACCATCAGCAGCATtcccatcaccatcaccatcatcatcagcCTCATTATCAGAGGAAGGAGAAGAACAAGTATTCCTCTGGCAGTGGACCCTCACATGGCAGTGGTCATTTGATGGCGCCCTCGGCCTCTGCTGTGAGCGGTTTCAACCCTGGCGTGCCGGCGCAGGGGTTGAATCCGGCGCTTGGACAGGCGTTGACCGCGCTGCTCACGAATCAGGGAGCTGGATTGGGGCTTGGGAATCTGCTTGGAGGGCTTGGCGGGGCACCACCGGTTAACCAGGCTGGGCCGCCTGCACCATACGGGAATCAGCCTGCCATGGGATATGGGAACCAGCCAGCAATGCAGCCGGGGTACCAGAATCCTCAAATGGGGCAGAGCAGTGGTGTTAGACCTCACCCTGGTGGTGGCGCTCCTCCTTACATGGGTCATTAG 1503 0.5429 MAKKRKLRSSDPEPTKPVEVEPHQQDQEPVEPNPEPTLEDPNTMALDEPTQEEEEEEEEQQLPQQNPEEEEEEEDQQEQKPETLEDDQQEQEPETLEAPNHAEENGAEEKANNDNNEEEENEDLTLEEEPVEKLLEPFTKEQLHSLVKQAVEKFPEFVESVRQLADVDPAHRKIFVHGLGWDATAETLTDVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRDDARKALKHPQKKIGNRTTSCQLASAGPVPAPPPNVNPVSEYTQRKIFVSNVSAEIDPQKLLEFFKQFGEVEDGPLGLDKNTGKPKGFALFVYKSVESSKKALEEPHKNFEGHTLYCQKAVDGPKGSKGYHQYHHQQHSHHHHHHHQPHYQRKEKNKYSSGSGPSHGSGHLMAPSASAVSGFNPGVPAQGLNPALGQALTALLTNQGAGLGLGNLLGGLGGAPPVNQAGPPAPYGNQPAMGYGNQPAMQPGYQNPQMGQSSGVRPHPGGGAPPYMGH 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3257 500 MobiDBLite consensus disorder prediction 113 127 - -
Ssu6g3257 500 MobiDBLite consensus disorder prediction 46 93 - -
Ssu6g3257 500 SMART rrm1_1 173 245 IPR000504 GO:0003723
Ssu6g3257 500 SMART rrm1_1 269 341 IPR000504 GO:0003723
Ssu6g3257 500 Gene3D - 97 257 IPR012677 -
Ssu6g3257 500 Gene3D - 258 389 IPR012677 -
Ssu6g3257 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 346 IPR000504 GO:0003723
Ssu6g3257 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 241 IPR000504 GO:0003723
Ssu6g3257 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 338 IPR000504 GO:0003723
Ssu6g3257 500 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 486 - -
Ssu6g3257 500 MobiDBLite consensus disorder prediction 1 28 - -
Ssu6g3257 500 SUPERFAMILY RNA-binding domain, RBD 160 253 IPR035979 GO:0003676
Ssu6g3257 500 SUPERFAMILY RNA-binding domain, RBD 252 367 IPR035979 GO:0003676
Ssu6g3257 500 MobiDBLite consensus disorder prediction 354 375 - -
Ssu6g3257 500 MobiDBLite consensus disorder prediction 94 112 - -
Ssu6g3257 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 249 IPR000504 GO:0003723
Ssu6g3257 500 Coils Coil 101 127 - -
Ssu6g3257 500 MobiDBLite consensus disorder prediction 472 500 - -
Ssu6g3257 500 MobiDBLite consensus disorder prediction 348 399 - -
Ssu6g3257 500 CDD RRM_RBM24_RBM38_like 268 343 - -
Ssu6g3257 500 MobiDBLite consensus disorder prediction 1 127 - -
Ssu6g3257 500 CDD RRM_RBM24_RBM38_like 172 247 - -
Ssu6g3257 500 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3257 Ssu-Chr6 74190852 74192354 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3257 264 347 C2H2 Transcription Factor Family AT2G19380 28.571 7.31e-09 56.2