Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3252 ATGGATTCTTTTGGACCAAATGGAAACGAGAATGAGGATTCCTTGCCTCCGCCACCTCTTGCTGTCCCATCAGATGTTATACCTGTCAAAGCTGAACCGGAGAAGAAAAAGGTTCTGAGGCTTCCAATAGCGAGGCGTGGCCTAGCTTCAAAAGGGATGAAGCTGCAACTTCTCACTAATCACTTCAAAGTGAATGTTGGAAACACTGATGGACACTTTTATCAGTATAGTGTAGCTGTTTCTTATGAAGATGGACGACCTGTGGAGGGTAAGGGCGTAGGGAGGAAGGTGCTGGACAGGGTGCAGGAAACTTATGATTCTGAATTGAATGGGAAGGACTTTGCTTATGATGGGGAGAAGACTTTGTTTACACTTGGCTCTCTTGCACGCAACAAGCTTGAGTTTACTGTGGTTctggaggatgtcacttcaaACAGGAATAATGGAAACTGCAGCCCTGATGGAAATGGAGAACCAAATGAGAATGACAAGAAGAGGATTAGGCGCCCTTATAGAGCCAAGACATTTAAAGTTGAGCTTAGCTTTGCTTCAAAGATTCCATTGCAGGCCATTTCCAATGCTCTACGTGGGCAGGAATCAGAGAATTTTCAAGAAGCAATAAGAGTGCTTGATATCATTTTGCGGCAACATGCTGCTAAACAAGGCTGTTTGCTTGTGCGCCAATCATTTTTCCACAATGATCCAAAAAATTATGCTGATGTAGGAGGAGGAGTACTTGGATGCAGGGGTTTCCACTCAAGTTTTAGAACTACCCAGAGTGGATTGTCTCTGAACATAGATGTCTCAACCACCATGGTAATTAACCCTGGGCCTGTGGTggattttcttatttcaaatcaaaatgtgaGAGATCCATATTCTCTTGATTGGGCAAAGgcTAAGAGGACACTGAAAAACTTGAGGATTAAAACGAGCCCATCTAATCAAGAATACAAAATCACTGGGCTCAGTGACCTGCCCTGCAAAGATCAAACATTTACATTGAAGAAAAAAGGTGGGATGGATGGTGATGATGCTACTGATGAAGTGACGGtatatgattattttgttaatcaCCGTAATATAGATCTCCGCTATTCTGGGGATCTCCCATGTATCAATGTTGGGAAGCCAAAACGGCCAACTTATTTTCCCCTTGAGCTTTGCTCTTTGGTATCCCTGCAACGGTATACAAAAGCACTGTCCACACTTCAAAGGGCTTCATTGGTGGAGAAGTCCAGGCAGAAGCCACAGGAGCGGATGAGGGTATTGTCTGATgCTCTTAAAAGTAGCAATTATGGTTCTGAACCTATGCTTCGCAATTGTGGGGTTTCTATAAGCTCTAGCTTTACTGAAGTTGAAGGTCGAGTTTTACAAGCTCCTAGgTTGAAGTTTGGTAATGGGGAGGACTTTAATCCAAGGAATGGGAGGTGGAACTTCAATAACAAGAAAATTGTCAAGCCAACTAAAATAGAAAGATGGGCTGTGGTTAACTTTTCTGCACGCTGTGATATAAGAGGACTTGTGAGGGATCTCATTAAGTGCGGTCAAATGAAAGGAATTGTGATAGATCAgccttttgatgtatttgaaGAAAATGGTCAGTTTAGGCGTGCCCCACCAATTGTTAGAGTGGAGAAGATGTTTGAGTTCATTCAGTCTAAACTTCCTGGGGCTCCTCAGTTTCTTCTTTGTCTGCTTCCTGAAAGGAAGAATTCTGATCTTTATGGTCCATGGAAGAAAAAGAATCTTGCTGAGTTTGGAATAGTTACTCAGTGTATAGCGCCAACAAGGGTCAATGACCAGTATTTAACTAATGTTCTGTTGAAGATCAATGCTAAGCTTGGTGGGCTGAATTCTCTGTTAGGCGTTGAGCTTGCTTCTTCCATTCCTGTTATTTCCAGAACTCCCACCATCATTATTGGCATGGATGTGTCTCATGGCTCGCCAGGGCAAACAGATATTCCTTCAATTGCAGCGGTTGTCAGCTCTCGAGAATGGCCTCTAATATCAAAGTACAGGGCATGCGTCCGTACCCAGTCTCCGAAGGTTGAAATGATTGATAATTTGTTCAAGAAAGTGTCTGAAAAGGAGGATGAAGGAATAATGagGGAACTTTTGCTTGATTTTTATACAAGTTCCGGGAATAAGAAACCGGACAATATAATCATATTCAGGGACGGCGTTAGTGAGTCACAGTtcaatcaagttttaaatattgaacTTGATCAAATTATTGAGgcCTGTAAGTTTTTGGACGAGAAGTGGAATCCCAAATTTTTGGTGATTGTTGCTCAAAAGAACCATCATACTAAATTCTTCCAACCTGGATCTCCTGACAATGTTCCTCCTGGAACtgttattgataataaaatttgtcatCCTCGGAATTATGATTTCTACTTATGTGCACATGCTGGAATGATAGGTACTAGCAGGCCTACACATTATCATGTTCTGTTAGATGAGATTGGGTTTTCACCTGATGATCTACAGGAGCTTGTGCATTCTTTGTCATATGTGTATCAGAGGAGCACCACTGCCATTTCTGTCGTTGCCCCAATATGCTATGCTCACCTTGCTGCAACTCAGATGGGTCAATTTATGAAATTTGACGAAAAATCAGAGACATCTTCGAGTCATGGTGGTCTGCCTGCTCCTCCTGTTCCTCAGTTGCCTAAATTGCAGGATAATGTCTCCAGCTCGATGTTCTTTTGTTGA 2721 0.4068 MDSFGPNGNENEDSLPPPPLAVPSDVIPVKAEPEKKKVLRLPIARRGLASKGMKLQLLTNHFKVNVGNTDGHFYQYSVAVSYEDGRPVEGKGVGRKVLDRVQETYDSELNGKDFAYDGEKTLFTLGSLARNKLEFTVVLEDVTSNRNNGNCSPDGNGEPNENDKKRIRRPYRAKTFKVELSFASKIPLQAISNALRGQESENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPKNYADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMVINPGPVVDFLISNQNVRDPYSLDWAKAKRTLKNLRIKTSPSNQEYKITGLSDLPCKDQTFTLKKKGGMDGDDATDEVTVYDYFVNHRNIDLRYSGDLPCINVGKPKRPTYFPLELCSLVSLQRYTKALSTLQRASLVEKSRQKPQERMRVLSDALKSSNYGSEPMLRNCGVSISSSFTEVEGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIVKPTKIERWAVVNFSARCDIRGLVRDLIKCGQMKGIVIDQPFDVFEENGQFRRAPPIVRVEKMFEFIQSKLPGAPQFLLCLLPERKNSDLYGPWKKKNLAEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLGVELASSIPVISRTPTIIIGMDVSHGSPGQTDIPSIAAVVSSREWPLISKYRACVRTQSPKVEMIDNLFKKVSEKEDEGIMRELLLDFYTSSGNKKPDNIIIFRDGVSESQFNQVLNIELDQIIEACKFLDEKWNPKFLVIVAQKNHHTKFFQPGSPDNVPPGTVIDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMGQFMKFDEKSETSSSHGGLPAPPVPQLPKLQDNVSSSMFFC 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3252 906 SUPERFAMILY PAZ domain 271 433 IPR036085 GO:0005515
Ssu6g3252 906 Pfam Piwi domain 563 870 IPR003165 GO:0003676
Ssu6g3252 906 Pfam Argonaute linker 2 domain 419 465 IPR032472 -
Ssu6g3252 906 MobiDBLite consensus disorder prediction 146 168 - -
Ssu6g3252 906 MobiDBLite consensus disorder prediction 1 25 - -
Ssu6g3252 906 CDD PAZ_argonaute_like 276 392 - -
Ssu6g3252 906 Gene3D paz domain 270 397 - -
Ssu6g3252 906 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 2 905 - -
Ssu6g3252 906 Pfam PAZ domain 280 409 IPR003100 GO:0005515
Ssu6g3252 906 Gene3D - 629 906 IPR036397 GO:0003676
Ssu6g3252 906 SUPERFAMILY Ribonuclease H-like 546 868 IPR012337 -
Ssu6g3252 906 Pfam Argonaute linker 1 domain 226 274 IPR014811 -
Ssu6g3252 906 SMART DUF1785_2 224 276 IPR014811 -
Ssu6g3252 906 CDD Piwi_ago-like 437 864 IPR045246 -
Ssu6g3252 906 Pfam N-terminal domain of argonaute 55 214 IPR032474 -
Ssu6g3252 906 SMART Piwi_a_2 562 870 IPR003165 GO:0003676
Ssu6g3252 906 ProSiteProfiles Piwi domain profile. 562 870 IPR003165 GO:0003676
Ssu6g3252 906 ProSiteProfiles PAZ domain profile. 301 393 IPR003100 GO:0005515
Ssu6g3252 906 MobiDBLite consensus disorder prediction 872 892 - -
Ssu6g3252 906 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 905 - -
Ssu6g3252 906 Gene3D - 457 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3252 Ssu-Chr6 74136575 74143241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3252 45 906 Eukaryotic Initiation Factors Gene Family AT5G43810 34.392 3.90e-160 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3252 K11593 - gmx:100779439 1696.79