Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3246 ATGGAGAAGAAGAGAGGAGTATTACCGGCGAAGGAGGCATTCGAGAAGCTTGAAAAGGTTGGAGAAGGGACATATGGGAAGGTGTATAGGGCAAGAGAGAAGGCCACCGGGATGATCGTTGCCCTAAAGAAGACTCGCCTCCACGAGGACGAACAAGGTGTCCCTCCCACCACTCTCCGCGAGGTTTCCATTTTGCGAATGCTCTCTCGCGATCCCCACGTCGTCAAGTTAATGGATTTAAAACAAGATCACAACAAGCAAGGCAACACAGTGCTCTACTTGGTATTTGAGTACATGGACACCGATCTCTATAAATTCATTCGCTCTTTCTCTCAAACTCCACAAGCCATTCCACCCCAAACCatcaaaTGCTTGATGTACCAACTTTGCAAGGGCGTTGCTTTCTGCCACAGTCATGGAATCTTGCACAGggACCTGAAGCCTCAGAATCTGTTGATGGACCCAAAAACAATGACGCTTAAAATAGCTGATCTTGGACTCGCTCGAGAATTTACTGTGCCAATTAAGCAATATACACGTGAGatACTGACCCTGTGGTATAGAGCTCCTGAAGTCCTCTTGGGAGCTACCCATTACTCAATGGCGGTGGACATGTGGTCCGTTGGCTGCATATTTGccgaACTTGTCACCAGACAAGCACTATTTCCTGGTGATTCCGAGCAGCGACAACTCCTTCGTATATTCAGGCTATTGGGTACTCCTAATGAAGAGGTGTGGCCAGGCGTGAGTAAATTAATGGACGGGCATGAATACCGGCAATGGAACCCTCAAAGTCTGTCAACGGCTGTTCCAAGTTTGGATGACCTTGGACTGGATCTCCTATCTCAAATGTTGAAATATGAACCTTCCAAGAGGATTTCTGCAAAGAAAGCAATGGATCATCCTTACTTTCATGACCTGGAGAAGAGCCACCTTTAG 939 0.4665 MEKKRGVLPAKEAFEKLEKVGEGTYGKVYRAREKATGMIVALKKTRLHEDEQGVPPTTLREVSILRMLSRDPHVVKLMDLKQDHNKQGNTVLYLVFEYMDTDLYKFIRSFSQTPQAIPPQTIKCLMYQLCKGVAFCHSHGILHRDLKPQNLLMDPKTMTLKIADLGLAREFTVPIKQYTREILTLWYRAPEVLLGATHYSMAVDMWSVGCIFAELVTRQALFPGDSEQRQLLRIFRLLGTPNEEVWPGVSKLMDGHEYRQWNPQSLSTAVPSLDDLGLDLLSQMLKYEPSKRISAKKAMDHPYFHDLEKSHL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3246 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Ssu6g3246 312 Gene3D Phosphorylase Kinase; domain 1 10 100 - -
Ssu6g3246 312 PANTHER - 4 311 - -
Ssu6g3246 312 Gene3D Transferase(Phosphotransferase) domain 1 102 311 - -
Ssu6g3246 312 PANTHER CELL DIVISION PROTEIN KINASE 4 311 - -
Ssu6g3246 312 SUPERFAMILY Protein kinase-like (PK-like) 12 307 IPR011009 -
Ssu6g3246 312 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Ssu6g3246 312 SMART serkin_6 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3246 312 Pfam Protein kinase domain 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3246 312 ProSiteProfiles Protein kinase domain profile. 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3246 Ssu-Chr6 74016635 74018674 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3246 4 312 Core Cell Cycle Gene Families AT1G20930 81.150 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Ssu6g3246 Pkinase 7.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3246 K07760 - gmx:547738 546.969