Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3237 ATGGGAGAAGGAAGTGATCATCAAGCTATGGCAGATGATGGGAATGCTGAACCTAGTGAAGGTGGAGTTAGTAATGCTGAAAACTCTGGCTCTCATGTTGAGGTTGGGGTTTCTGAGCCACACGTGGGTATGGAATTCGATTCTAAAGATGCTGCAAAGACTTTCTACAGTGAGTATGCCAGACAAGTGGGTTTCAGCTGCAAAGCTGGCCCGCATTGTCGTTCTAAAGCTGATGAGGCAAATATGTTCTGGGAATTTGTGTGTGGCAGGGAGGATCTGAAAAGAAAGCTTACTGAAAGTTGCAATGCAATGATTAGGATCGAGCAGAAGGGTCAAAATAAGTGGGTTGTTACAAAATTTGTAAAGGAGCATAGCCATTCCATGGCGAGCCTTAGTAAGGTGCATAATATTCGGCCAGGTAAGCACTTTTCTAGTGTTGGAAGAACCATGCCTGAAACTTACCAAGGAGTGGGGCTTGTTCCTAGTGGTGTGATGTATGTATCTATGGATAAGAATTGCATTCCCACTAAGAATATTCATGGGATTAGGAATATTCCTGCAGCTGCTAATGCTGCTGAAACAATTCACCCAGTTAAAAGTCCTACATTGATGAATTATGCAGTTAGGCCACCTACTCGAAAGAGGACAATAGGGAAGGATGCTCAGAACCTGCTGGAGTACTTTAAGAAAATGCAAGCTGAGAACCCTGGTTTCTTCTATGCAATACAACTTGATGAAAATAATCATATGTCTAATGTGTTTTGGGCAGATGCAAGATCACGGGCTGCTTACAGTCATTTTGGTGATGCAGTTACTCTGGACACAACATATAGAATAAATCAATATAGAGTGCCATTTGCTCCATTCACTGGGGTAAACCATCATGGTCAAATGATTTTGTTTGGATGTGCACTCCTTTTGGATGATTCTGAGGCTTCTTTTGTGTGGCTCTTTAAGACATTTCTGACAGCAGTGAATGACCACTACCCTGTCTCTATCACTACCGATCAAGACAGAGCCATACAGACAGCTGTTTCACAAGTTTTTCCTCAAACACGCCACTGTATAAGCAAATGGCATGTCTTGCGAGAAGGCCAGGAAAAGTTGGTTCATGTATGCAACATGCATCCAAATTTTCATATTGAActttataattgtattaatcTGACAGAAACAATTGAGGAGTTTGATTCATCTTGGAATTCTATCATTGATAAATATGAACTCAGAAGAAATGATTGGCTTCAGTCCTTGTACAGTGCTCGTGCTCAATGGGTTCCAGCATATTTTCATGATTCATTTTTTGCAGTAATATCTCCTAATCAAGGATTTGATGGTtcattttttaatggttttgtCAACCAGCAGACAACATTACCAATGTTCTTTAGGCAGTATGAAGTAGCTTTGGAGAGCTGGTTTGAGAAAGAATTAGAATCAGATTATGAGACAGTTTGTACCACCCCTGTTCTGAAGACACCTTCCCCAATGGAGAAGCAGGCTGCTAGTCTCTATACACCAAAAATATTTGCAAAGTTTCAAGAAGAGCTAGTTGAAACTTTTGCTTATACTGCCAACAGAATTGAAGAAGATAGAGCAAATAGCATATTCAGGGTTGCAAAATTTGAGGATGACCAAAAGACTTATATGGTCACATTAAACCATTCTGAGTTGAGAGCTAACTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTGTGTAGACATGTTCTAACTGTTTTTACTGTGACTAATGTACTTACATTACCATCTCATTACATTTTAAAACGGTGGACAAGAAATGCAAAAAGCAGTGCTGGATCAGATGAACTTGCTGGTGAATCACGTGGACATGAGTCTTTGACATTGCGATATAGCAATCTTTGTTGGGAAGCCATCAAATATGCTGAAGAAGGGGCAATAACTGTGGAAACTTATGATGCTGCAATTAATGCTCTTAGAGAAGTTGGAAAGAAGATTTCATTGATGAAGAGAAGTGTTGCCAAACTTGCCCCACCCAGTCATCCTGTCAGTGGGACTGGTTATGATGACAGAAAATCCCCTACTTCAACAGCAGATACTACCCCTCTTTTATGGCCATTGCAGGATGAAACAACAAAGAGGTTTAATCTTAATGATGCCGGTACTCCTGTTCAATCAGTTGCTGATCTAAATTTACCGCAAATGACCCCAGGGTCTCTTCAGCGAGATGGTGGTCCACCTGAAAACATGGTGATTTATCCATGTCTGAAATCATTGACGTGGGTAATGGAGAACAAGAACTCAACTCCAGGGAATAGAGTAGCTGTTATCAATCTTAAGTTGCAAGATTATAGCAGGATTCCGTCAACAGAATCGGAGGTTAAGTTTAATCTCTCAAAAGTTACCTTGGAACCATTGTTTAATCATATGGTCAACATCAGCGATCAGCTTTCCACACCAACTAGGAAATTTGCTGTATTAAATCTCAAGCTTCCAGTTGCTGAGACAACTTCTGGTGCGTGTGAAGTTAAGTTTCAGGTGTCGAAGGACACATTGAGTGCTGTGCTACGATCAATGGCCTATATTCGTGAGCAACTTTCGAGTCCTGGTGATACACAGACAGAGCCTATATCAAAAAGGCCTCGGAAGTGA 2634 0.4043 MGEGSDHQAMADDGNAEPSEGGVSNAENSGSHVEVGVSEPHVGMEFDSKDAAKTFYSEYARQVGFSCKAGPHCRSKADEANMFWEFVCGREDLKRKLTESCNAMIRIEQKGQNKWVVTKFVKEHSHSMASLSKVHNIRPGKHFSSVGRTMPETYQGVGLVPSGVMYVSMDKNCIPTKNIHGIRNIPAAANAAETIHPVKSPTLMNYAVRPPTRKRTIGKDAQNLLEYFKKMQAENPGFFYAIQLDENNHMSNVFWADARSRAAYSHFGDAVTLDTTYRINQYRVPFAPFTGVNHHGQMILFGCALLLDDSEASFVWLFKTFLTAVNDHYPVSITTDQDRAIQTAVSQVFPQTRHCISKWHVLREGQEKLVHVCNMHPNFHIELYNCINLTETIEEFDSSWNSIIDKYELRRNDWLQSLYSARAQWVPAYFHDSFFAVISPNQGFDGSFFNGFVNQQTTLPMFFRQYEVALESWFEKELESDYETVCTTPVLKTPSPMEKQAASLYTPKIFAKFQEELVETFAYTANRIEEDRANSIFRVAKFEDDQKTYMVTLNHSELRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKSSAGSDELAGESRGHESLTLRYSNLCWEAIKYAEEGAITVETYDAAINALREVGKKISLMKRSVAKLAPPSHPVSGTGYDDRKSPTSTADTTPLLWPLQDETTKRFNLNDAGTPVQSVADLNLPQMTPGSLQRDGGPPENMVIYPCLKSLTWVMENKNSTPGNRVAVINLKLQDYSRIPSTESEVKFNLSKVTLEPLFNHMVNISDQLSTPTRKFAVLNLKLPVAETTSGACEVKFQVSKDTLSAVLRSMAYIREQLSSPGDTQTEPISKRPRK 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3237 877 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 29 802 - -
Ssu6g3237 877 SMART 26again6 560 587 IPR006564 GO:0008270
Ssu6g3237 877 Pfam MULE transposase domain 271 362 IPR018289 -
Ssu6g3237 877 Pfam FAR1 DNA-binding domain 54 128 IPR004330 -
Ssu6g3237 877 MobiDBLite consensus disorder prediction 672 696 - -
Ssu6g3237 877 Pfam SWIM zinc finger 556 583 IPR007527 GO:0008270
Ssu6g3237 877 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 29 802 IPR031052 GO:0006355
Ssu6g3237 877 MobiDBLite consensus disorder prediction 1 33 - -
Ssu6g3237 877 ProSiteProfiles Zinc finger SWIM-type profile. 549 585 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3237 Ssu-Chr6 73865025 73869635 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ssu6g3237 MULE 9.8e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3237 - - gmx:100807296 1569.67