Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3202 atggatTTTGAACTGAGAAGAGCGAGAGAGAAGCTAGAGAAAGAGCAGAGGGAGCGGAAGGAGAAAGCAAGATTGAAAGTGCAGAAGGAAAGAAAGGCCAAAGAAGAGACTCAGAAGCAAAAGGAAGCCATTGAAGCTGTTCAAAGATCTCGTCGTATTGACGCGGCCGAAGCCCAACTCAAGGCTGACCAACAGATGCAAGAAAACCTACTTGCTGGCAGAGGAATAGTGTTTTATCGACTACTAGAGGCTGTACCTTATCAAGGTGGTGGAGATAAGATCAAACTGCCTCCTTCTTGCTTCACAGAACTGTCTGATCAGGGTGCTTTTGATAAGGGGCCCATATACTTTCAGTTGTCGTTAGTTCATGAGGAAAGCTCTTCAAGCATCAAAGGTACTGATAAAGAGAAACAGGGGACCACCCATTCAGGAGTTTTAGAATTCACTGCTGATGAAGGTTCAGTGGGTCTTCCTCCTCATGTatggaataatttattttctgaaGGCTCTGCAAAATCTCCATTAGTTGAAGTCCGCTATGTTTGGCTTCCAAAAGGGACATATGCTAAACTTCAACCTGAAAAAGTAGGATTTTCTGATTTGCCAAATCATAAGGCTATCCTTGAAACATGTCTTCGGCAGCATGCTTCTCTTTCTCAAGGTGACATTTTAACTGTAAACTATGGAGAACTTGCATACAAATTAAGGGTCCTTGAGTTAAAACCTTCTTCTAGTGTATCTGTTTTAGAAACAGATATTGAAGTTGACATAGTTGATCCTGATACATCTTCAGAAAAGACAGATGAGCATGTTTTAATGCCAGTTGTATTCGGAATGTCACAAATTGGAACAGTAGAGGAAGGAAAGTTTGTGTATTACAAATTTTCCATAGACAATGTCACATGGGGGAAACTCTTTTCTGGAAATTCTTGTATTGAGGTAAAATTAGAATCAGAGACAGATGGGGGGGACACTGATCTTTTCATCTCTAGACATCCTCTCATATTTCCTACACGACACCAGCATGAGTGGTCTTCTCATGATATTGGCTCAAAGACTTTGATTCTTAGCTCTAAAGATAAAAACTTGGGTGTGGGGACTTACAGCATTGGTATATATGGCTTCAAGGGAATGACTAAGTATAAAATATCAATCATGGTCCAGgataattttaaccaaaaagtTGGTCAGCAAGCATCATCTTCCGTGTCATCTATGGAAATGGATACTGAACAGTGTAGGAACTGCAAACATTATATACCCACTAGGACTATTGCACTGCATGAAGCTTACTGTAGTAGGCACAATGTTGTCTGCCAGCGTGCAGGCTGTGGAGTTGTTCTTAGGATTGAAGAGTCCCAGAATCACATTCACTGTGACAAATGTGGTCAGGCTTTCCAGCAGGTAGAATTAGAGAAGCACATGAAAGTTTTTCACGAGCCACTTCATTGCCCTTGTGGAATAATCCTCGAGAAAGAGCAAATGGTGAGTTGCATGTCTCTCaccctttcttgttag 1518 0.4005 MDFELRRAREKLEKEQRERKEKARLKVQKERKAKEETQKQKEAIEAVQRSRRIDAAEAQLKADQQMQENLLAGRGIVFYRLLEAVPYQGGGDKIKLPPSCFTELSDQGAFDKGPIYFQLSLVHEESSSSIKGTDKEKQGTTHSGVLEFTADEGSVGLPPHVWNNLFSEGSAKSPLVEVRYVWLPKGTYAKLQPEKVGFSDLPNHKAILETCLRQHASLSQGDILTVNYGELAYKLRVLELKPSSSVSVLETDIEVDIVDPDTSSEKTDEHVLMPVVFGMSQIGTVEEGKFVYYKFSIDNVTWGKLFSGNSCIEVKLESETDGGDTDLFISRHPLIFPTRHQHEWSSHDIGSKTLILSSKDKNLGVGTYSIGIYGFKGMTKYKISIMVQDNFNQKVGQQASSSVSSMEMDTEQCRNCKHYIPTRTIALHEAYCSRHNVVCQRAGCGVVLRIEESQNHIHCDKCGQAFQQVELEKHMKVFHEPLHCPCGIILEKEQMVSCMSLTLSC 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3202 505 Gene3D - 78 183 IPR042299 -
Ssu6g3202 505 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 1 498 IPR004854 GO:0006511
Ssu6g3202 505 Gene3D - 185 258 - -
Ssu6g3202 505 MobiDBLite consensus disorder prediction 1 43 - -
Ssu6g3202 505 Pfam Ubiquitin fusion degradation protein UFD1 91 260 IPR004854 GO:0006511
Ssu6g3202 505 PANTHER UBIQUITIN FUSION DEGRADATION UFD1 FAMILY PROTEIN 1 498 - -
Ssu6g3202 505 Coils Coil 5 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3202 Ssu-Chr6 73086635 73088951 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu6g3202 UFD1 1.8e-47 CL0402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3202 - - gmx:100777384 887.1