Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3198 ATGCACCTTCTCTTCTGCTCTGTCATTACCAATGCCAACACAACAACACACCTCGCTCTCCAAAATCCAAACCTACGTTGCATGAACACAGGCTTCACAGACTTTGTACTCTACGACCCAATGGAGCACAGATTCAGATTATCACTTTTCTTCTTGTTATTGGCCACTATATCGTTTAGTGCAGAATCCAAGTGTAGCAGGGGTTGTGACTTAGCTCTAGCTTCCTACTATCTATCACAAGATTCACAAGCTTATGAAATCCGGGTTCTTTCAGAAGCTGAAGATATTGTCAGCTACAACAAAGACACCATACAAAACAAAGACAATGTCCTCGCCTCTACCAGAGTGAACGTTCCATTCCCTTGTGATTGCATTGATGGAGAGTTTTTTGGCTATATCTTCCAATACAACCTTGCAGCAGGAGACACGTATACGTCTATTGCCACTCAGAACTACTCCAATTTGACCACTGCTGAGTGGTTGCAGAGATTCAACAACTATTCACCAACTGGTATTCCTCATAGTGGGACTCTTAATGTCACCACTAACTGTTCCTGTGGGAATAGCGAAGTTTCCAAGAAATATGGATTGTTCATCACATACCCTCTACGACCTGAGGATTCTTTGCAGTCAATTGCCAACAAGACTGGGGTGGAGAGTGACTTACTGCTAAAATACAACCCGGGTGTAAATTTTAGCCAAGGGAGTGGTCTAGTTTATATTCCAGGGAAAGAAGCAGGTCTTGCGGGTGGGGTTATTGCTGGAATATCTGTTGGAGTAGTGTCAGGAGTTCTGCTATTGGCATTTTGTGTTTATGTTACATATTACCGAAGAAAGAAGGTATGGAGGAAGAATTTGCTCTCAGAAGAATCCAGCATGAACTCTGCTAGAGTTAAGAATGTCCCTCTTTCAGATGAAGCCTCTGGTGGTCCTGCGGTAGAAGGTGGTACTAACACCATTGGCATTAGGTTGGAAAAATCAGCAGAGTTTTCATATGAAGAACTAGCCAATGCCACAAATAACTTCAGTTTGGCTAATAAAATTGGTCAAGGTGGTTTTGGGGAAGTCTATTATGCAGAGCTGAATGGCGAGAAAGCTGCAATAAAAAAGATGGACATGCAAGCATCAAGAGAATTTCTTGCCGAACTGAAAGTGTTGACACATGTTCATCACTTGAACCTGGTGCGCTTGATTGGATATTGTGTTGAGGGCTCCCTTTTCCTTGTGTATGAATACATTGATAATGGAAACTTGGGACAACATTTACGTAAATCAGGTTAA 1281 0.4223 MHLLFCSVITNANTTTHLALQNPNLRCMNTGFTDFVLYDPMEHRFRLSLFFLLLATISFSAESKCSRGCDLALASYYLSQDSQAYEIRVLSEAEDIVSYNKDTIQNKDNVLASTRVNVPFPCDCIDGEFFGYIFQYNLAAGDTYTSIATQNYSNLTTAEWLQRFNNYSPTGIPHSGTLNVTTNCSCGNSEVSKKYGLFITYPLRPEDSLQSIANKTGVESDLLLKYNPGVNFSQGSGLVYIPGKEAGLAGGVIAGISVGVVSGVLLLAFCVYVTYYRRKKVWRKNLLSEESSMNSARVKNVPLSDEASGGPAVEGGTNTIGIRLEKSAEFSYEELANATNNFSLANKIGQGGFGEVYYAELNGEKAAIKKMDMQASREFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIDNGNLGQHLRKSG 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3198 426 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 44 425 IPR044812 GO:0019199|GO:0045087
Ssu6g3198 426 ProSiteProfiles LysM domain profile. 199 248 IPR018392 -
Ssu6g3198 426 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Ssu6g3198 426 PANTHER LYSM RECEPTOR KINASE 1B 44 425 - -
Ssu6g3198 426 SUPERFAMILY Protein kinase-like (PK-like) 325 424 IPR011009 -
Ssu6g3198 426 Gene3D Phosphorylase Kinase; domain 1 316 412 - -
Ssu6g3198 426 ProSiteProfiles Protein kinase domain profile. 342 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3198 426 CDD LysM 199 231 IPR018392 -
Ssu6g3198 426 Pfam LysM domain 204 232 IPR018392 -
Ssu6g3198 426 Pfam Protein tyrosine and serine/threonine kinase 344 425 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3198 Ssu-Chr6 73008476 73013284 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3198 41 426 Receptor kinase-like Gene Family AT3G21630 50.971 2.57e-132 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Ssu6g3198 PK_Tyr_Ser-Thr 1.8e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3198 - K13429 gmx:100803042 595.504