Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3190 ATGGGCGTGACAGGCTATAGAGCCAAGAGCCCAAAAATCCCTATTGTTCTGACTGACTATCCATTTAGGTTCTTTGGtgttttcaaccaaaaaagaCTCAGATTTTTTAGCTTCATTTCCGGGAGTACTCTCTGGACAATTATATGCAGTGCTCTTTTTGAGAAAACAGTAAGGTGGGGACTAGGAACAACTGATCCAAGCCAAAGAGGGTTTGGAGGGAACAGTTGCAGTGAGCTTTCTTCGATGGACATGATGAACATGGAAACTAATAGGAAGTTTCTTTCTCTGCCTCTCAGTAACAACTCTGGTGCCCAAATGCGCAGTGATAGAAGGGTACCTGTCACTACCATAGCTCAGGACCATCACTACAACCACCAGAACCCCACCAACACTTGCAGTGTGAGGGATAAAATCATGGCACATCCTCTTTTTCCTCGTCTCTTGTCCTCTTACCTCAATTGCCTCAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGCTTAGAGGAGTCTTGTGCCAAATGTGAATCCTTCAATGCATCATCAGGAAGGACAGGAAGTGGTTCAATAGGTGAAGATCCAGCTCTGGACCAGTTCATGGAGGCCTACTGTGAGATGCTCATTAAGTACGAGCAAGAGCTCACAAAACCTTTTAAGGAAGCCATGCTTTTCTTCTCAAGAATTGAGTGTCAGCTCAAAGCCCTAGCAGTTTCATCAGATTTTGgTCAAAGTGAATCATCTTCTCAGAATGAGGTTGATGTGCATGAAAACAACCTAGATTCTCAAGCTGAAGATCGGGAACTCAAAGTCCAGCTTTTGCGCAAGTATAGTGGATATCTAGGGAGCCTCAAGAAGGAATTtctgaagaagaaaaagaatggaaagTTGCCAAAGGAAGCTCGGCAACAGCTACTTGATTGGTGGAACAGGCATTATAAATGGCCTTACCCTTCGGAATCCCAAAAGCAGGCTCTTGCGGAATCCACAGGCCTTGATCTGAAGCAAATCAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTGAGGATATGCAATTTGCCGTGATGGATGCAACTAACTATTACATGGAAAATGTTATGTGCAAGCCATTTCCCATGGATGGCATGCCTATGCTTCTTTAA 1149 0.4299 MGVTGYRAKSPKIPIVLTDYPFRFFGVFNQKRLRFFSFISGSTLWTIICSALFEKTVRWGLGTTDPSQRGFGGNSCSELSSMDMMNMETNRKFLSLPLSNNSGAQMRSDRRVPVTTIAQDHHYNHQNPTNTCSVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCESFNASSGRTGSGSIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFFSRIECQLKALAVSSDFGQSESSSQNEVDVHENNLDSQAEDRELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDGMPMLL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3190 382 Pfam KNOX2 domain 188 234 IPR005541 GO:0003677|GO:0005634
Ssu6g3190 382 Gene3D - 284 357 - -
Ssu6g3190 382 ProSiteProfiles ELK domain profile. 266 286 IPR005539 GO:0003677
Ssu6g3190 382 SMART HOX_1 288 353 IPR001356 GO:0003677
Ssu6g3190 382 PANTHER HOMEOBOX KNOTTED-LIKE PROTEIN 70 373 - -
Ssu6g3190 382 Pfam Homeobox KN domain 306 345 IPR008422 GO:0003677|GO:0006355
Ssu6g3190 382 SMART ELK_2 266 287 IPR005539 GO:0003677
Ssu6g3190 382 Pfam ELK domain 266 287 IPR005539 GO:0003677
Ssu6g3190 382 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 70 373 - -
Ssu6g3190 382 SMART KNOX1_2 132 176 IPR005540 GO:0003677|GO:0005634
Ssu6g3190 382 SUPERFAMILY Homeodomain-like 288 360 IPR009057 -
Ssu6g3190 382 ProSitePatterns 'Homeobox' domain signature. 324 347 IPR017970 GO:0000981|GO:0006355
Ssu6g3190 382 ProSiteProfiles 'Homeobox' domain profile. 286 349 IPR001356 GO:0003677
Ssu6g3190 382 Pfam KNOX1 domain 134 175 IPR005540 GO:0003677|GO:0005634
Ssu6g3190 382 SMART KNOX2_2 185 236 IPR005541 GO:0003677|GO:0005634
Ssu6g3190 382 CDD homeodomain 298 350 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3190 Ssu-Chr6 72880442 72885673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3190 134 376 Homeobox Transcription Factor Family AT1G62360 68.872 4.58e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ssu6g3190 KNOX2 5.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3190 - - gmx:100791704 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3190 6 72880442 72885673 Ssu6g3190 6 72880442 72885673 ECH