Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3185 ATGGCCACAATCCTGTGCGCCGCAACCACCATAACACTCTTACTCCTCCTGACTTCCTCCGTCCCAAAATCTCAATCCCAACAAGAGTACGTAAACAACAAACAACTACGCTGCGACAACAACGACTTCAACTCCACGAAGGGCAACCGCTGCAACAGCGTCCCCTCCTGCGCCTCCTACCTCACCTTCAAATCCTCCCAGCCGGATTACTCTTCCGCCGTCACCATCTCCTACCTCCTCAACTCCACCGCCACCGTCATCGCCGCCGCCAACAACATCACCGACGTCCAGCCCATCCCCGCCGACACCCTCGTCTCCGTCCCGGTCAACTGCTCCTGCTCCGGCCCCTACTACCAGCACAACGCCTCCTACTCCATCAAAGTCCAGGGCGAAACCTACTTCACCATCGCCAACAACACCTACCAGGCCCTCACCACGTGCCAGGCCCTCATCGCCCAGAACCCCTACAACGAACGCAACCTCACCAAAGGCGACAACATCCACGTGCCTCTCAGGTGCGCCTGCCCCACGCAGAAACAGCGCCAGGCCGGGTTTAAGTACTTGCTCACCTACTTGGTCTCTCAGGGAGAATCGGTTTCTTCCATTGCTGATATCTTCGGGGTCGATCAGCAGAGCATTCTCGACGCAAACGAGCTTACCAGTGCCTCCGTTATTTTCTACTTCACGCCGATTTCGGTTCCTTTGAAAACAGAGCCACCGGTTAGGATACAGACGGCAGCGTCTCCGCCGGCGtctccgccgccgccgccgaTATCTCCCGCGGGGGACGATGATTCTGACTCTTCCAAGAAATGGGTTATTGTTGGAGTTGTGGTTGGGGTTGTTGTGTTGCTTCTCGTGGGTGCCGCTCTGTTTTTCCTCTGCTTTTATCGCCGCCGGCGGTTGCAGCCGCCGCCGGCTGCGGCCAAGCCTGTCTCGGCTTCTATCGCCACGGAGGCAACTTTTCCGACGACACAATCAACGTGGTCTCTTTCTTCGGAAGGGGTTCGTCATGCGATTGAGTCGTTGAGTGTGTACAAGTTCGAGGAGTTGCAGAATGCGATGGGGTTCTTCGGTGAAGAGAATAAGATCAAGGGTTCTGTTTATAGGGCTTCTTTCAAGGGTGATTATGCTGCGGTGAAGGTTCTCAAAGGGGATGTGTCCGGCGAGATTAACATTCTGAAGAGGATTAACCACTTCAACATTATAAGGTTGTCGGGTTTTTGTGTGTACAAAGGTGACACGTATCTTGTGTACGAGTTTGCGGAGAATGATTCTCTTGAGGATTGGCTTCATGGTGGCAGTAAGAAGCACGAGAATTCGGTGTCTCTGAGTTGGATGCAAAGGGTTCAGATTGCGCATGATGTTGCTGACGCGCTTAACTACCTTCATAATTACGCTAGTCCTCCTCATGTGCATAAGAATTTGAAGAGTGGGAACGTGCTTTTGGATGGGAATTTTAGGGCTAAGGTTTCGAATTTTGGGTTGGCGAGAGCGGTGGAGGGTCAAGGGGATGATGGGGGGTTTCAATTGACGAGGCACGTGGTGGGGACTCAAGGGTACATGCCGCCTGAGTATATTGAGAATGGTTTGATTACTCCAAAGATGGATGTTTTTGCGTTTGGGGTTGTGGTTTTGGAGCTTCTTTCGGGGAGAGAGGCGGTTGGTGGGGATAAGAATGGATCCGGGGAGCAGATGCTGTCGGTAACTGTGAATCAGGTGCTTGAAGGAGAGAATGTTAGAGAGAAACTTCGAGGTTTCATGGATCCAAATCTGAGGGATGAATATCCTTTGGATCTGGCTTACACCATGGCGGAGCTTGCCAAACAGTGTGTTGCTCGTGACCTCAATTCAAGACCACAGATTTCTGAAGTTTTCATGACTTTGTCCAAGATTCAATCTTCTTCGTTGGATTGGGATCCGTCTGATGAGCTTGAACGGTCTAGATCTGCTAGCCAAATCTATGATAGCAGATAG 1977 0.5134 MATILCAATTITLLLLLTSSVPKSQSQQEYVNNKQLRCDNNDFNSTKGNRCNSVPSCASYLTFKSSQPDYSSAVTISYLLNSTATVIAAANNITDVQPIPADTLVSVPVNCSCSGPYYQHNASYSIKVQGETYFTIANNTYQALTTCQALIAQNPYNERNLTKGDNIHVPLRCACPTQKQRQAGFKYLLTYLVSQGESVSSIADIFGVDQQSILDANELTSASVIFYFTPISVPLKTEPPVRIQTAASPPASPPPPPISPAGDDDSDSSKKWVIVGVVVGVVVLLLVGAALFFLCFYRRRRLQPPPAAAKPVSASIATEATFPTTQSTWSLSSEGVRHAIESLSVYKFEELQNAMGFFGEENKIKGSVYRASFKGDYAAVKVLKGDVSGEINILKRINHFNIIRLSGFCVYKGDTYLVYEFAENDSLEDWLHGGSKKHENSVSLSWMQRVQIAHDVADALNYLHNYASPPHVHKNLKSGNVLLDGNFRAKVSNFGLARAVEGQGDDGGFQLTRHVVGTQGYMPPEYIENGLITPKMDVFAFGVVVLELLSGREAVGGDKNGSGEQMLSVTVNQVLEGENVREKLRGFMDPNLRDEYPLDLAYTMAELAKQCVARDLNSRPQISEVFMTLSKIQSSSLDWDPSDELERSRSASQIYDSR 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3185 658 PANTHER PROTEIN LYK5 15 649 - -
Ssu6g3185 658 SMART LysM_2 190 234 IPR018392 -
Ssu6g3185 658 SMART LysM_2 123 170 IPR018392 -
Ssu6g3185 658 Pfam LysM domain 191 234 IPR018392 -
Ssu6g3185 658 CDD LysM 190 226 IPR018392 -
Ssu6g3185 658 MobiDBLite consensus disorder prediction 244 265 - -
Ssu6g3185 658 Gene3D Phosphorylase Kinase; domain 1 331 421 - -
Ssu6g3185 658 MobiDBLite consensus disorder prediction 636 658 - -
Ssu6g3185 658 SUPERFAMILY Protein kinase-like (PK-like) 366 629 IPR011009 -
Ssu6g3185 658 ProSiteProfiles Protein kinase domain profile. 281 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3185 658 Gene3D Transferase(Phosphotransferase) domain 1 422 649 - -
Ssu6g3185 658 Gene3D LysM domain 189 243 IPR036779 -
Ssu6g3185 658 MobiDBLite consensus disorder prediction 640 658 - -
Ssu6g3185 658 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 15 649 - -
Ssu6g3185 658 MobiDBLite consensus disorder prediction 246 261 - -
Ssu6g3185 658 Pfam Protein kinase domain 385 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3185 658 SUPERFAMILY LysM domain 189 234 IPR036779 -
Ssu6g3185 658 ProSiteProfiles LysM domain profile. 189 233 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3185 Ssu-Chr6 72844428 72846404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3185 1 650 Receptor kinase-like Gene Family AT2G33580 53.994 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Ssu6g3185 Pkinase 5.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3185 - - gmx:100818534 993.416