Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3174 ATGGTGTCCACAAAGCTTGTATCATTTCAGCTGATTCTCATCACGCACTTCTGTTCACTTTCAAGGCTCTCTTCCTGGGAAGTTTCTGCTGGCGTTTCTTTTGGTAATACTACCGTTATGGTTGGCTATGAAGCTGCAGAAGATGAAGACAGTGAAGCAAGTGCTCTATTAAAGTGGAAAGCCACCCTTGATAACCAAAGTCAGGCTTCCTTGTCTTCTTGGTCCCCCTTTACTAGTCCTTGCAAGTGGCAAGGAATTGTTTGTGATGAATCCAACTCTGTCAGCACTATAAGTGTTACAAATTTTGGACTCAAAGGTACTCTTCTCAATCTCAACTTGTCATCCTTTCCTAAGCTGCTGTGTCTTGATGTAAGTTACAACTTCTTGAGTGGACCTATTCCCCACCAAATTGGTAACCTGTCCAGAATTTCTCAGTTGAAAATGAATCATAATCTTTTTAGTGGTTTCATCCCCCAAGAAATAGGGGCACTGCATAACTTGAAGTATCTGTCCTTGAGACTAAATGGACTTTCTGGTTCCATCCCCCCAACAATTGGAATGTTGAAAAATCTTGTTGAACTTCATTTGGCTTCCAACAATCTCTCTGGTGCAATCCCTTCAATTAGAAACTTGACAAATCTAGAACAAATTCTCCTCCATAACAACCTTCTCTCTGGCCCTATTCCTGAGGAGTTGGGAAGACTTCATTCTCTCCAAACAatcaaattgttgaaaaataatttttccggGCCAATCCCATCTTCCATTGGAGACTTGGCTAATTTGAGAAAGCTTCAGCTCAGTTTTAATAAACTTAATGGATCAATTCCATCCACTGTTGGAAACTTGACAAAACTCACTGAATTGTCCATGTCCAAAAACAAGCTTTCTGGACCAATTCCTGCTTCCATAGGAAACTTGGTCAATCTGAGGAGGCTTAGCCTTTCAGAAAACGATCTTTCCGGACCTATTCCCTCTACCTTCAGAAATTTGACAAAGCTCACCGTTCTATTACTTTATATGAGCAACCTCAATGGTAGTTGTTCACCAATAAATAACCTTACCAATTTATTAAGCTTACAACTAAGCTTGAATCATTTCACTGGCCCTTTGCCACAACATATTTGCCTTGGAGGCTCACTTGCAAATTTTTCTGCTAATAGGAATCATTTCATGGGTCCAATTCCGACAAGCTTGAAGAACTGCCCCAGCCTTGTTAGGCTCAACCTTGCAGAAAATATGTTGACTGGAAATATTTCAAATGACTTTGGTATATATCCAAATCTGAACTACATTGGTCTGAGTAGCAATGATTTTTATGGCCACATTTCACCAAATTGGGCAAAGTGTCCTAGTCTCACAAGCCTTGGGATGTCCAACAACAATTTATCTGGTGCTATACCGCCAGAACTCGGCCAGGCACCCAAGTTAAAACTACTTGATTTGTCTTCAAATCATCTAACAGGAAAAATTCCAAAAGAACTTGGGAACTTGACCTCATTGTTTCAACTCTCCATAAGTGATAACAAACTTTCAGGCAACATTCCCATAGAAATAGGATCCTTAAAGCAACTTAGCAACTTAAATCTTGcaacaaataatttaagtgGCTCAATCCCAAAACAGCTCGGAGGGTTGCTCAATTTAATCCACTTGAACTTAAGCCAGAACAGATTCACGGAAAGCATTCCCTCTGAATTTAACCAACTGCAATTTCTTCAAGCTCTTGATCTTAGTTggaattttttaaatggaaaaattcCGGCAGCACTTGGAAGTTTGAAAATATTGGAAACGTTGAACCTCTCGCACAACAATCTCTCTGGAACCATTCCATCTGAATTTAAGGATATGTTGAGCTTGACAAATGTTGACATATCTTACAACCAATTAGAGGGTGCAATTCCTAACAGTCCAGCCTTTCTTAAGGCTCCATTTGAAGCATTGCAACCTAATAAAGACTTGTGTGGTAATGCTTCCGGGTTGGCGCCTTGCCCAGAGTTGAGTCCCAATCCTCATGGTAAAAAGAGAAATGTGCTGATGTTGGCACTATTCCTTACTTGGGGTGCACTCTTGCTAATAGTGTTTGCAGTTGGAgtttcattatatattcattGGCAAAGAgcaagaaaaatcaaaaggcGGGCCAGAGAAGAACAAACTCAAGATCTTTTTTCTATATGGGGTTATGATGGAAAAATAGTGCATGCAAATATCATCGAAGCAACACAGAATTTTGATGACAAATATCTCATTGGAGAAGGAGGGTTTGGAGCTGTTTACAAGGCTATCTTACCCTCTGGCCAGATTGTTGCTGTGAAAAAGTTTCAGACTGAAGTTGACAGGGAAATGCTTAGTTTTAAGGCTTTTACAGCTGAAGTTCGAGCCCTGACAGAAATCAAACATCGTAACATTGTGAAGTTGTATGGGTTTTGTGCACATCCACGCTATTGTTTTTTGGTTTATGAGTTCCTAGAAGGTGGCAGCTTGGATAAAGCACTAAACAACAACACGCATGCAGCAAAGTTTGATTGGAATAGGAGGGTTAACGTTGTTAAAGGTGTGGCAAATGCTTTGTATCATATACATCACGGTTGCTCTCCTCCTATAGTTCATCGTGACATATCAAGCAAGAATGTTCTTATAGATTTGGAGTATGAAGCTCGCATATCCGACTTTGGAACAGCAAAGATTCTGAATCCTAATTCACGCAATTTCACTTCGTTTGCAGGCACTTATGGATATGCTGCACCAGAGCTTGCTTATACTATGGAAGTGAATGAGAAATGTGATGTCTATAGTTTTGGGGTCCTTTCTTTGGAAATAATAATGGGAAATCATCCAGGAGATCTCATTTCTTCAATGCATTCAGCCTCTTCAACACCAGGAACGTCTAATTTGCTATTGAAGGATGTGCTGGACCAACGACTTCCTCTTCCAGTGGTGCCAGTTGTTAAGGAGGTGGTCTTGATTGCAAAAATGGCATTTGCTTGCTTGGATGAAAGACCACTTTATCGCCCAACCATGGAAGATGTGTATAACATGTTTGTCATGTCTAAATCACCTGTAATGAAGGAGAGATTCCACACCATTGCACTTAGACAACTtcaaaattgttga 3120 0.391 MVSTKLVSFQLILITHFCSLSRLSSWEVSAGVSFGNTTVMVGYEAAEDEDSEASALLKWKATLDNQSQASLSSWSPFTSPCKWQGIVCDESNSVSTISVTNFGLKGTLLNLNLSSFPKLLCLDVSYNFLSGPIPHQIGNLSRISQLKMNHNLFSGFIPQEIGALHNLKYLSLRLNGLSGSIPPTIGMLKNLVELHLASNNLSGAIPSIRNLTNLEQILLHNNLLSGPIPEELGRLHSLQTIKLLKNNFSGPIPSSIGDLANLRKLQLSFNKLNGSIPSTVGNLTKLTELSMSKNKLSGPIPASIGNLVNLRRLSLSENDLSGPIPSTFRNLTKLTVLLLYMSNLNGSCSPINNLTNLLSLQLSLNHFTGPLPQHICLGGSLANFSANRNHFMGPIPTSLKNCPSLVRLNLAENMLTGNISNDFGIYPNLNYIGLSSNDFYGHISPNWAKCPSLTSLGMSNNNLSGAIPPELGQAPKLKLLDLSSNHLTGKIPKELGNLTSLFQLSISDNKLSGNIPIEIGSLKQLSNLNLATNNLSGSIPKQLGGLLNLIHLNLSQNRFTESIPSEFNQLQFLQALDLSWNFLNGKIPAALGSLKILETLNLSHNNLSGTIPSEFKDMLSLTNVDISYNQLEGAIPNSPAFLKAPFEALQPNKDLCGNASGLAPCPELSPNPHGKKRNVLMLALFLTWGALLLIVFAVGVSLYIHWQRARKIKRRAREEQTQDLFSIWGYDGKIVHANIIEATQNFDDKYLIGEGGFGAVYKAILPSGQIVAVKKFQTEVDREMLSFKAFTAEVRALTEIKHRNIVKLYGFCAHPRYCFLVYEFLEGGSLDKALNNNTHAAKFDWNRRVNVVKGVANALYHIHHGCSPPIVHRDISSKNVLIDLEYEARISDFGTAKILNPNSRNFTSFAGTYGYAAPELAYTMEVNEKCDVYSFGVLSLEIIMGNHPGDLISSMHSASSTPGTSNLLLKDVLDQRLPLPVVPVVKEVVLIAKMAFACLDERPLYRPTMEDVYNMFVMSKSPVMKERFHTIALRQLQNC 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3174 1039 Gene3D Phosphorylase Kinase; domain 1 707 824 - -
Ssu6g3174 1039 Pfam Protein kinase domain 748 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3174 1039 SUPERFAMILY RNI-like 324 637 - -
Ssu6g3174 1039 Pfam Leucine Rich Repeat 597 616 IPR001611 GO:0005515
Ssu6g3174 1039 Pfam Leucine Rich Repeat 573 594 IPR001611 GO:0005515
Ssu6g3174 1039 SUPERFAMILY Protein kinase-like (PK-like) 734 1017 IPR011009 -
Ssu6g3174 1039 PRINTS Leucine-rich repeat signature 477 490 - -
Ssu6g3174 1039 PRINTS Leucine-rich repeat signature 594 607 - -
Ssu6g3174 1039 Pfam Leucine rich repeat 261 320 IPR001611 GO:0005515
Ssu6g3174 1039 Pfam Leucine rich repeat 451 511 IPR001611 GO:0005515
Ssu6g3174 1039 ProSitePatterns Tyrosine protein kinases specific active-site signature. 870 882 IPR008266 GO:0004672|GO:0006468
Ssu6g3174 1039 Gene3D Transferase(Phosphotransferase) domain 1 825 1030 - -
Ssu6g3174 1039 Gene3D Ribonuclease Inhibitor 350 667 IPR032675 -
Ssu6g3174 1039 ProSitePatterns Protein kinases ATP-binding region signature. 752 775 IPR017441 GO:0005524
Ssu6g3174 1039 Gene3D Ribonuclease Inhibitor 258 349 IPR032675 -
Ssu6g3174 1039 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 9 1037 - -
Ssu6g3174 1039 SMART LRR_sd22_2 164 179 - -
Ssu6g3174 1039 SMART LRR_sd22_2 283 309 - -
Ssu6g3174 1039 SMART LRR_sd22_2 498 530 - -
Ssu6g3174 1039 SMART LRR_sd22_2 188 213 - -
Ssu6g3174 1039 SUPERFAMILY L domain-like 67 395 - -
Ssu6g3174 1039 ProSiteProfiles Protein kinase domain profile. 746 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3174 1039 SMART LRR_typ_2 211 235 IPR003591 -
Ssu6g3174 1039 SMART LRR_typ_2 164 188 IPR003591 -
Ssu6g3174 1039 SMART LRR_typ_2 354 378 IPR003591 -
Ssu6g3174 1039 SMART LRR_typ_2 450 474 IPR003591 -
Ssu6g3174 1039 SMART LRR_typ_2 307 330 IPR003591 -
Ssu6g3174 1039 SMART LRR_typ_2 546 570 IPR003591 -
Ssu6g3174 1039 SMART LRR_typ_2 475 498 IPR003591 -
Ssu6g3174 1039 SMART LRR_typ_2 594 617 IPR003591 -
Ssu6g3174 1039 SMART LRR_typ_2 259 283 IPR003591 -
Ssu6g3174 1039 Gene3D Ribonuclease Inhibitor 208 257 IPR032675 -
Ssu6g3174 1039 Gene3D Ribonuclease Inhibitor 49 207 IPR032675 -
Ssu6g3174 1039 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 1037 - -
Ssu6g3174 1039 Pfam Leucine rich repeat N-terminal domain 50 89 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3174 Ssu-Chr6 72288052 72291278 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3174 52 918 Receptor kinase-like Gene Family AT4G08850 45.183 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu6g3174 Pkinase 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3174 - - gmx:100800924 1534.62