Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3172 ATGGTGTTCACTAAGCTTTCATTAGTTCGTCTAATTCTCTGTTCACTCTTAAGGCTCCATTCCTCCCAACTTTTCACGTTTTCCTACTTTGCCTTTGCTGCCGTCAGTGCTTATGAAGTTGCAGAAAACCAAGATAGGGAAGCAAGTGCTCTATTTGAATGGAAAGTGAGCCTTGACAACCGAAGCCAAGCTTCTCTGCCTTCGTGGATCACAGGTGTCAGTCCTTGCAAGTGGGAAGGAATCGTTTGTGACGAATCCAACTCTGTGACCGCTATAAATGTTGCAAATCTTGGGCTAAAAGGTACTCTTCACAGTCTCAACTTCTCATCCTTTCCCAGGCTGCTAAGTCTGGATATTAGTGACAACAGTTTTAGTGGAACTATTCCTCAGCAAATTGCTAACTTGTCCAGAGTTTCTCAATTGAAAATGGATGCTAATCATTTCACTGGTTCAATCCCTATTTCCATGATGAAGTTGGCTAGCTTGTCATATCTAAACTTGATAGGCAATAAACTTTCTGGCCCTATTCCTCAGGAGATTGGAGAATTGAGGAGCTTGGAGCGTCTATTACTTGATGCAAATGGACTTTCTGGTACAATTCCTCCAACAATTGGAACGTTGCCTAACCTCGTTGAACTTTCTTTGTCACGTAACTCTATCTCTGGTACAATCCCCCCTTCAGTtacaaatttgacaaatttaaaattccttGAGCTCTCAAACAATACTCTCTCTGGCCCCATTCCACCCTACATAGGAGACTTGGTCAATTTGCTTGTTTTTGAATTCGATCGGAATAGAATTTCAGGATCAATTCCTTCCAACATTGCAAACTTGACAAAGCTGGTCAATGTGTCCATGGGCGGTAACATGATTTCTGGACCCATTCCTACCTCCATTGGAAACTTGGTCAATCTAATGTCCTTAGACCTTTCGAAGAACAAGATTTCCGGAGTTATTCCTTCCACCTTTGGAAATTTGACAAACCTCGTCCTGTTATTACTGCATAATAACACACTTCAAGGTAGATTACCAGCACTGAATAACCTCACCAAAATCCAAAGCTTACAACTATCTACAAATAGTTTCACTGGTCCTTTGCCACAACAAATTTGCCTTGGTGGGTCACTCAGAAGATTTGCTGCTAACGAGAATTATTTCACCGGTCCAGTTCCGAAAAGCCTGAAAAATTGCTCCAGTCTTTTCAGACTCAGACTAGATGGAAACCAGTTGATCGGAAATATATCAGATGATTTTGGTGTATATCCAGAGTTGAACTACATTGATCTGAGTAGCAATAATTTTTATGGCCACATTTCACAAAATTGGGCAAAGTGTCCTAGTCTCACAACCCTTAAGATGTCCAACAACAATTTATCTGGCGGTATACCACCAGAACTCGGCCAGGCACCCAAGTTACAAGTACTTTACTTGTCTTCCAATCATCTAACAGGAAAAATTCCAAAAGAACTTGGGATCTTGACTTCATTGTTTGATATATCAATAAGCGACAATGAACTTTCTGGCAACATTCCTACAGAAATAGGATCTTTGTTGAGCCTTACATATTTGGAGCTAGCAGCAAATAATTTGGGTGGCCCAATTCCAAAACAGGTGGGAGAGTTGCTCAATTTACTTAACTTGAACTTGAGAAAGAACAAATTCACAGAAAGCATTCCTTCCGAATTTAACCATTTGCAATCTCTTCAAGATCTTGATCTCAGTTGGAATTTGTTAAATGGAGAAATACCAGCAGCACTTACAAGTATGCAAAGATTGGAAACGCTAAACCTCTCACACAACAATCTCTCTGGAGCCATTCCACCTAAGTTTAAGGATATGATTAGCTTGACAAATGTTGACATATCTAACAACAAATTGGAGGGTTCAATTCCTAACAATCCAGCCTTTCTTAAGGCTCCATTTGAtgcattgaaaaataataaaggctTGTGTGGAAATGCCTTAGGTTTGGTGCCTTGCCCAGAGTTTAGTCACAACCCTcatggaaaaatgaaaagaaatgtcATCATGTTGGCATTAGTCCTTACTTTCGGTGCTCTATTTCTAGTATTATTCGTGGTTGGAGTTTCGTTATGTCTTTGTTATCGAAGAGCAACAAAAGCCAAAAAGAAGGAggctaaagaagaaaaaactcaGGATCATTATTCCATGTGGAGTTATGACGGAAAAATAGTGTATGAAAATATCATTGAAGCCACAGAGGGGTTTGATGACAAATATCTCATTGGAGAAGGAGGGTCTGCATCTGTTTATAAGGCAAAATTACCCACAGGACAGATTGTTGCTGTGAAGAAACTTCATGCTGTGCCCACCGAGGAAACACTAAATTTAAAAGCTTTTACAACGGAGGTTCAGGCCTTGGCAGAAATCAAGCATCGTAACATTGTGAAGTCACTTGGATATTGTTTACATCCACGTTTCTCCTTTTTGGTTTATGAGTTCCTGGAGGGGGGTAGCTTGGATAAAGTACTAAACAATGATACGCGTGCAGTAACGTTTGATTGGCAGAGGAGGGTGAAGGTTGTTAAAGGTGTGGCAAATGCTTTGTACCATATGCATCACGGTTGCTCTCGTCCTATTGTTCATCGTGACATATCAAGCAAGAACGTTCTTATAGACTTGGATTATGAAGCCCGCATCTCTGACTTCGGAACAGCTAAAATTCTGAATCCTGATTCACACAATTTAACCACGTTTGCAGGCACCTATGGGTATGCTGCCCCAGAGCTTGCTTATACTATGGAAGTGAATGAGAAATGTGATGTCTTTAGTTTTGGAGTGCTTTGTTTGGAAATAATCATGGGAAAGCATCCAGGAGATCTCATCTCTTCATTACTTTCATCCTCTGGAATGTCATCAGCCTCTAATTTGCTGTTAAAGGATGTGCTGGACCAACGACCACCTCATCCAGTGAAGCCAGTTGTTGAGGAGGTGATCTTGATTGCAAAAATAACATTTGCTTGCTTAAGTGAAAGTCCACGTTTTCGTCCAAGCATGGAACAAGTGCATAACGAGTTTGTGATGCCAAAATCATCTTCAATGGATCCACTCCCCATGATCACACTTGGCCAACTCGTAAATAATTGA 3111 0.397 MVFTKLSLVRLILCSLLRLHSSQLFTFSYFAFAAVSAYEVAENQDREASALFEWKVSLDNRSQASLPSWITGVSPCKWEGIVCDESNSVTAINVANLGLKGTLHSLNFSSFPRLLSLDISDNSFSGTIPQQIANLSRVSQLKMDANHFTGSIPISMMKLASLSYLNLIGNKLSGPIPQEIGELRSLERLLLDANGLSGTIPPTIGTLPNLVELSLSRNSISGTIPPSVTNLTNLKFLELSNNTLSGPIPPYIGDLVNLLVFEFDRNRISGSIPSNIANLTKLVNVSMGGNMISGPIPTSIGNLVNLMSLDLSKNKISGVIPSTFGNLTNLVLLLLHNNTLQGRLPALNNLTKIQSLQLSTNSFTGPLPQQICLGGSLRRFAANENYFTGPVPKSLKNCSSLFRLRLDGNQLIGNISDDFGVYPELNYIDLSSNNFYGHISQNWAKCPSLTTLKMSNNNLSGGIPPELGQAPKLQVLYLSSNHLTGKIPKELGILTSLFDISISDNELSGNIPTEIGSLLSLTYLELAANNLGGPIPKQVGELLNLLNLNLRKNKFTESIPSEFNHLQSLQDLDLSWNLLNGEIPAALTSMQRLETLNLSHNNLSGAIPPKFKDMISLTNVDISNNKLEGSIPNNPAFLKAPFDALKNNKGLCGNALGLVPCPEFSHNPHGKMKRNVIMLALVLTFGALFLVLFVVGVSLCLCYRRATKAKKKEAKEEKTQDHYSMWSYDGKIVYENIIEATEGFDDKYLIGEGGSASVYKAKLPTGQIVAVKKLHAVPTEETLNLKAFTTEVQALAEIKHRNIVKSLGYCLHPRFSFLVYEFLEGGSLDKVLNNDTRAVTFDWQRRVKVVKGVANALYHMHHGCSRPIVHRDISSKNVLIDLDYEARISDFGTAKILNPDSHNLTTFAGTYGYAAPELAYTMEVNEKCDVFSFGVLCLEIIMGKHPGDLISSLLSSSGMSSASNLLLKDVLDQRPPHPVKPVVEEVILIAKITFACLSESPRFRPSMEQVHNEFVMPKSSSMDPLPMITLGQLVNN 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3172 1036 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 1034 - -
Ssu6g3172 1036 Gene3D Ribonuclease Inhibitor 248 345 IPR032675 -
Ssu6g3172 1036 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 6 1034 - -
Ssu6g3172 1036 Pfam Leucine Rich repeat 591 605 IPR001611 GO:0005515
Ssu6g3172 1036 ProSiteProfiles Protein kinase domain profile. 744 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3172 1036 Gene3D Ribonuclease Inhibitor 346 662 IPR032675 -
Ssu6g3172 1036 SUPERFAMILY L domain-like 445 649 - -
Ssu6g3172 1036 Gene3D Transferase(Phosphotransferase) domain 1 823 1023 - -
Ssu6g3172 1036 SUPERFAMILY L domain-like 57 223 - -
Ssu6g3172 1036 SMART LRR_typ_2 446 470 IPR003591 -
Ssu6g3172 1036 SMART LRR_typ_2 542 565 IPR003591 -
Ssu6g3172 1036 SMART LRR_typ_2 303 326 IPR003591 -
Ssu6g3172 1036 SMART LRR_typ_2 207 230 IPR003591 -
Ssu6g3172 1036 SMART LRR_typ_2 159 183 IPR003591 -
Ssu6g3172 1036 SMART LRR_typ_2 590 613 IPR003591 -
Ssu6g3172 1036 SMART LRR_typ_2 566 589 IPR003591 -
Ssu6g3172 1036 SMART LRR_typ_2 231 255 IPR003591 -
Ssu6g3172 1036 SMART LRR_typ_2 471 494 IPR003591 -
Ssu6g3172 1036 Pfam Leucine rich repeat 184 244 IPR001611 GO:0005515
Ssu6g3172 1036 Pfam Leucine rich repeat 305 362 IPR001611 GO:0005515
Ssu6g3172 1036 Pfam Leucine rich repeat 423 483 IPR001611 GO:0005515
Ssu6g3172 1036 SUPERFAMILY Protein kinase-like (PK-like) 722 1013 IPR011009 -
Ssu6g3172 1036 Pfam Protein kinase domain 746 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3172 1036 Gene3D Ribonuclease Inhibitor 158 247 IPR032675 -
Ssu6g3172 1036 ProSitePatterns Tyrosine protein kinases specific active-site signature. 868 880 IPR008266 GO:0004672|GO:0006468
Ssu6g3172 1036 PRINTS Leucine-rich repeat signature 590 603 - -
Ssu6g3172 1036 PRINTS Leucine-rich repeat signature 306 319 - -
Ssu6g3172 1036 ProSitePatterns Protein kinases ATP-binding region signature. 750 773 IPR017441 GO:0005524
Ssu6g3172 1036 Gene3D Phosphorylase Kinase; domain 1 704 822 - -
Ssu6g3172 1036 Gene3D Ribonuclease Inhibitor 45 157 IPR032675 -
Ssu6g3172 1036 SMART LRR_sd22_2 303 329 - -
Ssu6g3172 1036 SMART LRR_sd22_2 566 595 - -
Ssu6g3172 1036 SMART LRR_sd22_2 518 544 - -
Ssu6g3172 1036 SMART LRR_sd22_2 255 281 - -
Ssu6g3172 1036 SMART LRR_sd22_2 207 233 - -
Ssu6g3172 1036 Pfam Leucine rich repeat N-terminal domain 45 84 IPR013210 -
Ssu6g3172 1036 SUPERFAMILY L domain-like 190 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3172 Ssu-Chr6 72179099 72182312 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3172 46 916 Receptor kinase-like Gene Family AT4G08850 44.040 0.0 732
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu6g3172 Pkinase 2.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3172 - - gmx:100797314 1501.49