Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3166 ATGCAAATTGGGATCCCGAAGCCTTCTCAAAGATTGGACGAGGTGTACTTTGGAAGCTTTGCCGCTTGGTGTGAAGCTAGAGGAACTTGTAGAGTTGAAAATACGTTacagcaaaataaaaagatatggaGTGAACCTCAATTTTTCTCAAAGTTGAAGTTCATTGATCTGAGCCATTCCGAAGATCTAATTGAAAGTCCTATAGTTTCTGGGGTTCCATGTCTTGAAATCTTACTTCTTGAAGGTTGTATAAACCTTGTTGAGGTTCACCAGTCTGTTGGACAGCACAAGAAGCTTCTTCTATTGAACTTGAAAGACTGCATAAATCTTCAAACCCTTCcaacaaattttgaaatggaTTCCTTGGAGGAATTGATTCTTTCTGGCTGctcaaaagttaaaaagctCCCCAACTTTGGAAAGAATATGCAATGTTTATCACTGCTTAATTTGGAGAAATGCAAAAATCTTCTTTGCCTACCAAAGTCTATTTGCAATCTGAAATCTCTTGGGAAGCTTAGTATTTGCGGTTGCTCAAAATTTTCTACCTTGCCCAACAGTATGAATGAAAATGGGTCTTTGGAGGAACTTGATGTGAGTGGGACTTGCATAAGAGAAATTACTTCATCCAATGTTTGTTTAGAAAATCTTAAAGAGCTCTGTTTTGGTGGATGGAAAGAACATGCATCCAACTCATCATGGAACTTACATCAATGTATCCCAATGTTTAGGTGGCAACTAGTTCCGAAGGAGTTGATCTTGCCTCCTCTTTCCCGTTTAACTAGCTTGAAGTTCTTGAATTTAAGTTATTGTGACCTTAATGATGAATCAATTCCAGATGATCTTGGATCCTTATCATCTTTGTTGGGCTTAGATCTGAGTGGGAACTATTTTGTTAGTCCACCTACTCATTGCATGAGTAATCTTTATACCCTGCAGAGTTTAACCTTAATTGATTGCCCAAGGCTTGAGTCTTTGCCTATGCTTCCACCAAGTGTTCAATGCTTGCATACAACTAATAGTACTCAAACGAGACCCTTGAATTCAGATGCATATATGTTGTGGAAGATCTTTGAGTCACGTATGAATCAggcatattttttatatacacctCATTCTCTCCCTCCTTTGCCCCCTACCCACCCTAATTATTTCCATAAAGTTTGTGTCTACCAAATGGAAGATAGGCCGCATTTTTTGTTCGTCATTCCAGggaaagaaattcaaaaatggAATGAAGAGTGCTTTGTAATCGATCCATCACATCATCCATATAACATGTTGGGTTCTGATTTAGTTGCATCAATAATAGTGGATGTACCTAGCTATTGTGGGTCTAGTGGATGGTTAGGAATTGTAATATGCCTTGCATTAGAACCTTCAAATATGCAGCACTCTTCTCCGACACATTCCATGGGCAACGAGGAAACGTGCATTTATTATTGGGCTGGCAAAGCCCCTGATGGGGAACCTGACTTGACTTTCCCCATAGTACCTAAATTTAGCCACTTTGTTTATGAATGCAATGAAGAGAAATGCCTACTTCAACTGATATTTTATGTGGAGAATCATTCTAAACCATTGAAGCCAACAATAAGGAAGCTTGGGTGTCGTGTTATATTTAAGGAAGATGTTGAAGATTGGTGGAAGCACTCAAGTGGTCCCAGTACATCAACTAATTGA 1683 0.3708 MQIGIPKPSQRLDEVYFGSFAAWCEARGTCRVENTLQQNKKIWSEPQFFSKLKFIDLSHSEDLIESPIVSGVPCLEILLLEGCINLVEVHQSVGQHKKLLLLNLKDCINLQTLPTNFEMDSLEELILSGCSKVKKLPNFGKNMQCLSLLNLEKCKNLLCLPKSICNLKSLGKLSICGCSKFSTLPNSMNENGSLEELDVSGTCIREITSSNVCLENLKELCFGGWKEHASNSSWNLHQCIPMFRWQLVPKELILPPLSRLTSLKFLNLSYCDLNDESIPDDLGSLSSLLGLDLSGNYFVSPPTHCMSNLYTLQSLTLIDCPRLESLPMLPPSVQCLHTTNSTQTRPLNSDAYMLWKIFESRMNQAYFLYTPHSLPPLPPTHPNYFHKVCVYQMEDRPHFLFVIPGKEIQKWNEECFVIDPSHHPYNMLGSDLVASIIVDVPSYCGSSGWLGIVICLALEPSNMQHSSPTHSMGNEETCIYYWAGKAPDGEPDLTFPIVPKFSHFVYECNEEKCLLQLIFYVENHSKPLKPTIRKLGCRVIFKEDVEDWWKHSSGPSTSTN 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3166 560 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51 138 IPR044974 GO:0006952
Ssu6g3166 560 Gene3D Ribonuclease Inhibitor 29 244 IPR032675 -
Ssu6g3166 560 Gene3D Ribonuclease Inhibitor 245 349 IPR032675 -
Ssu6g3166 560 PANTHER - 51 138 - -
Ssu6g3166 560 PANTHER - 134 346 - -
Ssu6g3166 560 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 134 346 IPR044974 GO:0006952
Ssu6g3166 560 SUPERFAMILY L domain-like 40 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3166 Ssu-Chr6 71853164 71855057 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3166 97 288 WRKY Transcription Factor Family AT4G12020 28.079 7.37e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3166 - - gmx:100798387 810.446