Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3162 ATGCCATCATACGATGAGGGATTGGTTGGAATTGATTCGAGAGTTGAGAAAATGAATTCACTTTTGAAAATAGAATTGAAAGACGAGGTTCGCTTTGTTGGAATATGGGGCATGGGTGGTATCGGAAAGACAACTCTAGCGAGAGttgtgtttaataaaatatgtatccAATTTGATATTAGTTGCTTCCTTGAAAATGTAAGGGAGATTTCTGGGAAAGGTGACGGTATGCTTAGCTTACAAGGAACACTTCtttcttatatgaaaataaaagacttgaaaattcaaaatttggatGAAGGAAAGAACATAATACGAGGTCTCTTACACAACAACAAAGTTCTCCTCGTCCTTGATGATGTTGACGACATAAGGCAGCTAGAGAATTTGGGTGTGAATGATCAAGAGTGGTTAGGCCTTGGGAGCaggattataataataacaagagacATGGAAGTACTAAGATCACATGGAACAGttgaaagttataaaattgATCTCTTAAATTCTGATGAATCCCTTCAACTCTTCAGTCAGAAAGCATTTAAAAGAGATCAACCATTAGAACATCAATTGCTGTTGTCAAAAGTGGCTGTTCAACAAGCTGGAGGCCTTCCTCTGGCCCTTGAGATGATGGCTTCATCCTTCTGTGGGAGAAGTGAATCTCAATGGAAAGAATTTTTGGATAAGAAAGAATACCCAAAGAAAGCTAGTGTGATGGAGAAACTTATAGTAAGCTATGATGGGTTACCACCAAATTATCagattttatttcttgatattgCTTGTTTCTTCAATGGGTGGGTAAAAGAGCATGTGGCACAAATTCTAACAATTTGTGACCGTTATCCAGCAAATGGAATTGAAGTTCTAATTGATAAATCACTAGCAACTTATGATGGATTGCGTTTGGGGATGCATGAGTTACTTCAAGAAGTGggaagaaaaattgtttttgaagaaTATCCAACAGATGCTGGCAAACGCAGTAGGCTGTGGTCGCCCCAACACATTGATCAAGCACTGAAAAGAAACAAGAAAAAGTTGATTCAGGGAATAGTTTTGAAGTCGTCCACTCAACCATACAATGCAAATTGGGATCCCGAAGCCTTCTCAAAGATGTATAATCTTCAAttccttataattaattttcacaatATACAATTTTCTCGTGGCCTCAAATGTCTTTGCAGTTCATTGAAATTTCTTCAGTGGACGAGGTGTACTTTGGAAGCTTTGCCGCTTGGTGTGAAGCTAGAGGAACTTGTAGAGTTGAAAATACGTTacagcaaaataaaaaagatatggaGTGAACCTCAATTTTTCTCAAAGTTGAAGTTCATTGATCTGAGCCATTCCGAAGATCTAATTGAAAGTCCTATAGTTTCTGGGGTTCCATGTCTTGAAATCTTACTTCTTGAAGGTTGTATAAACCTTGTTGAGGTTCACCAGTCTGTTGGACAGCACAAGAAGCTTCTTCTATTGAACTTGAAAGACTGCATAAATCTTCAAACCCTTCcaacaaattttgaaatggaTTCCTTGGAGGAATTGATTCTTTCTGGCTGctcaaaagttaaaaagctCCCCAACTTTGGAAAGAATATGCAATGTTTATCACTGCTTAATTTGGAGAAATGCAAAAATCTTCTTTGCCTACCAAAGTCTATTTGCAATCTGAAATCTCTTGGGAAGCTTAGTATTTGCGGTTGCTCAAAATTTTCTACCTTGCCCAACAGTATGAATGAAAATGGGTCTTTGGAGGAACTTGATGTGAGTGGGACTTGCATAAGAGAAATTACTTCATCCAATGTTTGTTTAGAAAATCTTAAAGAGCTCTGTTTTGGTGGATGGAAAGAACATGCATCCAACTCATCATGGAACTTACATCAATGTATCCCAATGTTTAGGTGGCAACTAGTTCCGAAGGAGTTGATCTTGCCTCCTCTTTCCCGTTTAACTAGCTTGAAGTTCTTGAATTTAAGTTATTGTGACCTTAATGATGAATCAATTCCAGATGATCTTGGATCCTTATCATCTTTGTTGGGCTTAGATCTGAGTGGGAACTATTTTGTTAGTCCACCTACTCATTGCATGAGTAATCTTTATACCCTGCAGAGTTTAACCTTGATTGATTGCCCAAGGCTTGAGTCTTTGCCTATGCTTCCACCAAGTGTTCAATGCTTGCATACAACTAATAGTACTCAAACGAGACCCTTGAATTCAGATGCATATATGTTGTGGAAGATCTTTGAGTCACGTATGAATCAggcatattttttatatacacctCATTCTCTCCCTCCTTTGCCCCCTACCCACCCTAATTATTTCCATAAAGTTTGTGTCTACCAAATGGAAGATAGGCCGCATTTTTTGTTCGTCATTCCAGggaaagaaattcaaaaatggAATGAAGAGTGCTTTGTAATCGATCCATCACATCATCCATATAACATGTTGGGTTCTGATTTAGTTGCATCAATAATAGTGGATGTACCTAGCTATTGTGGGTCTAGTGGATGGTTAGGAATTGTAATATGCCTTGCATTAGAACCTTCAAATATGCAGCACTCTTCTCCGACACATTCCATGGGCAACGAGGAAACGTGCATTTATTATTGGGCTGGCAAAGCCCCTGATGGGGAACCTGACTTGACTTTCCCCATAGTACCTAAATTTAGCCACTTTGTTTATGAATGCAATGAAGAGAAATGCCTACTTCAACTGATATTTTATGTGGAGAATCATTCTAAACCATTGAAGCCAACAATAAGGAAGCTTGGGTGTCGTGTTATATTTAAGGAAGATGTTGAAGATTGGTGGAAGCACTCAAGTGGTCCCAGTACATCAACTAATTGA 2862 0.3578 MPSYDEGLVGIDSRVEKMNSLLKIELKDEVRFVGIWGMGGIGKTTLARVVFNKICIQFDISCFLENVREISGKGDGMLSLQGTLLSYMKIKDLKIQNLDEGKNIIRGLLHNNKVLLVLDDVDDIRQLENLGVNDQEWLGLGSRIIIITRDMEVLRSHGTVESYKIDLLNSDESLQLFSQKAFKRDQPLEHQLLLSKVAVQQAGGLPLALEMMASSFCGRSESQWKEFLDKKEYPKKASVMEKLIVSYDGLPPNYQILFLDIACFFNGWVKEHVAQILTICDRYPANGIEVLIDKSLATYDGLRLGMHELLQEVGRKIVFEEYPTDAGKRSRLWSPQHIDQALKRNKKKLIQGIVLKSSTQPYNANWDPEAFSKMYNLQFLIINFHNIQFSRGLKCLCSSLKFLQWTRCTLEALPLGVKLEELVELKIRYSKIKKIWSEPQFFSKLKFIDLSHSEDLIESPIVSGVPCLEILLLEGCINLVEVHQSVGQHKKLLLLNLKDCINLQTLPTNFEMDSLEELILSGCSKVKKLPNFGKNMQCLSLLNLEKCKNLLCLPKSICNLKSLGKLSICGCSKFSTLPNSMNENGSLEELDVSGTCIREITSSNVCLENLKELCFGGWKEHASNSSWNLHQCIPMFRWQLVPKELILPPLSRLTSLKFLNLSYCDLNDESIPDDLGSLSSLLGLDLSGNYFVSPPTHCMSNLYTLQSLTLIDCPRLESLPMLPPSVQCLHTTNSTQTRPLNSDAYMLWKIFESRMNQAYFLYTPHSLPPLPPTHPNYFHKVCVYQMEDRPHFLFVIPGKEIQKWNEECFVIDPSHHPYNMLGSDLVASIIVDVPSYCGSSGWLGIVICLALEPSNMQHSSPTHSMGNEETCIYYWAGKAPDGEPDLTFPIVPKFSHFVYECNEEKCLLQLIFYVENHSKPLKPTIRKLGCRVIFKEDVEDWWKHSSGPSTSTN 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3162 953 PRINTS Disease resistance protein signature 440 456 - -
Ssu6g3162 953 PRINTS Disease resistance protein signature 32 47 - -
Ssu6g3162 953 PRINTS Disease resistance protein signature 202 216 - -
Ssu6g3162 953 PRINTS Disease resistance protein signature 108 122 - -
Ssu6g3162 953 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 528 - -
Ssu6g3162 953 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 514 812 - -
Ssu6g3162 953 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 528 IPR044974 GO:0006952
Ssu6g3162 953 SUPERFAMILY "Winged helix" DNA-binding domain 241 343 IPR036390 -
Ssu6g3162 953 Pfam NB-ARC domain 24 230 IPR002182 GO:0043531
Ssu6g3162 953 Gene3D - 167 251 IPR042197 -
Ssu6g3162 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 261 IPR027417 -
Ssu6g3162 953 Gene3D Ribonuclease Inhibitor 534 743 IPR032675 -
Ssu6g3162 953 Gene3D Ribonuclease Inhibitor 362 532 IPR032675 -
Ssu6g3162 953 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 514 812 IPR044974 GO:0006952
Ssu6g3162 953 SUPERFAMILY L domain-like 365 723 - -
Ssu6g3162 953 Gene3D - 1 162 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3162 Ssu-Chr6 71773301 71776569 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3162 8 615 WRKY Transcription Factor Family AT4G12020 32.868 3.01e-71 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3162 - - gmx:100798387 1517.29