Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3144 ATGCAAGTGGCGGCAGAACTCCAACACAGCCATCACCACCAAAGGCACCAGGACACCCCGATGTGCCGCCAAATCCAACTCACTATCTCCGATCACACCCTCTCCCACGCCACCGCCGGCGACGGTGGCTCCGACAAGGTGGACGGCCAGGATCTCTTCGTTCCGCCCCTCAACTTCGCCATGGTTGATAGTGGCATTTTCCGCTCCGGCTTCCCGGAACCCGCCAACTTCTCCTTCCTCCAAACCCTTGGCCTCCGTTCCATCATATATTTGTGTCCTGAGCCGTATCCGGAGGCCAACATGGAGTTCCTCAAGTCAAATGGGATCAAGCTTTATCAGTTTGGGATTGAGGGTCATAAGGAGCCTTTTGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTCCTTGATATCAGGAACCACCCAGTTATAATTCACTGTAAGCGGGGGAAGCACCGAACAGGTTGTTTAGTAGGATGCTAtagaaaattgcaaaaatggTGCTTGTCATCTGTCTTTGATGAGTACCAGCGCTTTGCAGCTGCCAAAGCAAGAGTTTCAGATCAGAGGTTTGTAGAGTTGTTTGATATTTCCAGCCTGAAACATTTGCCCATACCattttcatgtttgaagagGTAA 648 0.4861 MQVAAELQHSHHHQRHQDTPMCRQIQLTISDHTLSHATAGDGGSDKVDGQDLFVPPLNFAMVDSGIFRSGFPEPANFSFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLYQFGIEGHKEPFVNIPEDTIREALKVVLDIRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSLKHLPIPFSCLKR 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3144 215 ProSiteProfiles Dual specificity protein phosphatase domain profile. 58 212 IPR020422 GO:0006470|GO:0008138
Ssu6g3144 215 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 200 IPR029021 -
Ssu6g3144 215 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Ssu6g3144 215 Gene3D Protein tyrosine phosphatase superfamily 52 202 IPR029021 -
Ssu6g3144 215 PANTHER - 34 212 - -
Ssu6g3144 215 PRINTS Plant and fungal dual specificity phosphatase signature 90 103 IPR020428 GO:0016791
Ssu6g3144 215 PRINTS Plant and fungal dual specificity phosphatase signature 53 70 IPR020428 GO:0016791
Ssu6g3144 215 PRINTS Plant and fungal dual specificity phosphatase signature 109 123 IPR020428 GO:0016791
Ssu6g3144 215 PRINTS Plant and fungal dual specificity phosphatase signature 126 140 IPR020428 GO:0016791
Ssu6g3144 215 PANTHER TYROSINE-PROTEIN PHOSPHATASE 34 212 - -
Ssu6g3144 215 CDD PFA-DSP_Siw14 52 199 - -
Ssu6g3144 215 Pfam Tyrosine phosphatase family 54 205 IPR004861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3144 Ssu-Chr6 71450736 71453794 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3144 49 215 Protein tyrosine phosphatase (PTP) family AT4G03960 77.844 1.30e-99 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3144 K18045 - gmx:100814279 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3144 6 71450736 71453794 Ssu6g3144 6 71450736 71453794 ECH