Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3143 ATGGAAGAGGTCTCCGCGGGGCCTCTCGTCCCCGCCGTCAAACCCGACGCGTCCAAAGCCGCCGCCGACACGGACCTCTCCGCCGCCGCGTCCGGCGACACGTTCCCGGCGACGACGTCGGAGCCGGACAAGGACTTCCTGTGTCCGATTTGCATGCAGATCATCAAGGACGCGTTCCTCACCGCGTGCGGCCACAGCTTCTGCTACATGTGCATCATCACTCACCTCCGCAACAAGAGCGATTGCCCTTGCTGCAGCCTCTACCTCACCAACAACAACTTGTTCCCTAACTTTTTGCTCGACAAGCTACTAAAGAAGACTTCTGCGCGTCAAATATCAAGAACCGCTTCACCTGTGGAACATTTCCGGCAGGCATTGCAAAAGGGTTGTGATGTGACAATTAAGGAGCTAGACACCCTTTTGTCACTTCTTGccgagaagaaaagaaaaatggaacaAGAAGAAGCTGAGAGAAATATGCAAATATTGTTAGACTTCTTGCATTGTTTACGCAAGCAAAAAGTTGATGAGTTGAAGGAGGTGCAAACCGATCTACAGTTTATAAAAGAGGACATTAATGCTGTGGAGAAACATAGAATGGACTTGTATCGGGCACGAGACAGGTACTCTGTAAAATTGCAGATGCTTGATGATTCTGGTGGAAGAAAATCATGGCATTCATCAATGGACAAGAACAGCAGTGGCCTTATATCTAGTCCTCTAAATCTTCGAGGAGGGTTGTCTTCAGGGAGCCATACTAAGAAAAATGATGGAAAGTCCCAAATTAGCTCTCATGGGCATGGAGTTCAGAGAAGGGATGCCATCACTGGATCTGATTCACAATACATAAATCAATTGGGTCTTGCCCTAGTTAGAAAAAAGAGGGTGCATACACAGTTCAATGACCTACAAGAATGTTACCTACAAAAGCGACGGCATGCAGCAGATAAGCCCCATAGCCAACAAGAAAGAGATATAAATCTCATAAGTCGAGAAGGTTATAGTGCTGGTCTTGAAGATTTTCAGTCAGTCTTGACAACTTTCACACGCTATAGCCGATTGAGAGTCATTGCGGAACTAAGGCATGGGGATATATTTCATTCAGCCAATATAGTGTCAAGCATAGAGTTTGACTGCGATGATGATTTGTTTGCTACTGCTGGAGTTTCCCGGCGCATCAAAGTTTTTGACTTTTCTGCTGTTGTGAATGAACCGACAGATACTCATTGTCCTGTTGTAGAGATGTCTACACGTTCAAAACTTAGCTGCCTGAGTTGGAATAAATATGCTAAGAACCAAATAGCTAGTAGTGATTATGAAGGAATTGTGACTGTTTGGGATGTAACCACTCGGAAGAGTTTAATGGAATATGAAGAACATGAAAAGCGTGCATGGAGTGTTGATTTTTCAGGAACAGATCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAGGTACTCTGGAACATTTATTTGGAAGTTTTTATGCCAATTTCCCTGGAATGCTTCTGTAATTTCCAATATTTTTGCAATGAAAGCCATACTTAA 1548 0.4399 MEEVSAGPLVPAVKPDASKAAADTDLSAAASGDTFPATTSEPDKDFLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSLYLTNNNLFPNFLLDKLLKKTSARQISRTASPVEHFRQALQKGCDVTIKELDTLLSLLAEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEVQTDLQFIKEDINAVEKHRMDLYRARDRYSVKLQMLDDSGGRKSWHSSMDKNSSGLISSPLNLRGGLSSGSHTKKNDGKSQISSHGHGVQRRDAITGSDSQYINQLGLALVRKKRVHTQFNDLQECYLQKRRHAADKPHSQQERDINLISREGYSAGLEDFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDCDDDLFATAGVSRRIKVFDFSAVVNEPTDTHCPVVEMSTRSKLSCLSWNKYAKNQIASSDYEGIVTVWDVTTRKSLMEYEEHEKRAWSVDFSGTDPSMLVSGSDDCKVLWNIYLEVFMPISLECFCNFQYFCNESHT 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3143 515 Pfam Zinc finger, C3HC4 type (RING finger) 48 85 - -
Ssu6g3143 515 ProSiteProfiles Zinc finger RING-type profile. 48 86 IPR001841 -
Ssu6g3143 515 Gene3D - 339 496 IPR015943 GO:0005515
Ssu6g3143 515 MobiDBLite consensus disorder prediction 226 267 - -
Ssu6g3143 515 PANTHER E3 UBIQUITIN-PROTEIN LIGASE COP1 3 488 IPR042755 GO:0061630
Ssu6g3143 515 MobiDBLite consensus disorder prediction 218 276 - -
Ssu6g3143 515 Coils Coil 171 198 - -
Ssu6g3143 515 SMART WD40_4 408 447 IPR001680 GO:0005515
Ssu6g3143 515 SMART WD40_4 450 489 IPR001680 GO:0005515
Ssu6g3143 515 SMART WD40_4 353 397 IPR001680 GO:0005515
Ssu6g3143 515 ProSitePatterns Zinc finger RING-type signature. 63 72 IPR017907 -
Ssu6g3143 515 SUPERFAMILY RING/U-box 33 104 - -
Ssu6g3143 515 SMART ring_2 48 85 IPR001841 -
Ssu6g3143 515 CDD RING-HC_COP1 44 89 - -
Ssu6g3143 515 SUPERFAMILY WD40 repeat-like 369 486 IPR036322 GO:0005515
Ssu6g3143 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 139 IPR013083 -
Ssu6g3143 515 PANTHER E3 UBIQUITIN-PROTEIN LIGASE COP1 3 488 - -
Ssu6g3143 515 Coils Coil 134 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3143 Ssu-Chr6 71376292 71383370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3143 44 95 RAD5 or RAD16-like Gene Family AT5G05130 41.509 5.17e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3143 K10143 - gmx:100788171 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3143 6 71376292 71383370 Ssu6g3143 6 71376292 71383370 ECH