Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3141 ATGCCAGAAAACAGGCAGGTTCTGAGGAATGCTGATTCTACACCATCCGGTGACAACATTGAAGAAGCAATTCAACGTCTGAAAATCAATGATAATTGGGATAGAGATGCTGCAGCTCAATCTGCCCAATATCCTGATCGACCTGGCGAACCTGATTGCTTATATTATTTGAGGACTGGGATGTGTGGTTATGGGAGTAACTGTCGCTACCATCACCCTGCTCATATTTCAATTGGTACTCATTATGGTGAAGAACTCCCTCAGAGAGTCGGGCAACCTGATTGTGAgTATTTTCTTAAGACAGGGACATGCAAGTATGGATCAACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGCGCCTGTGTCATTCAATACTTTAGGTCTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGAGTTGCATGCAAGTTTCATCATCCACAGCATGGTTCCCTTGGAGCATACCCCTTGGCTGGATCTCCTACCTCAACAATTATTCCTGCATCAAGTTTACCATATGCTGGCGGCTTTCCTGGATGGTCAGTACCACGAATGTCGTATTTATCTGGGCAGGGCCTTCAGTCTTATGTGCCTCCTTTTCTGTCTTCTTCACAAGGCATTATACCTGTGCAGAGCTGGAACAACTACATGGGAAGTATGAACCCTGCAATGCCTACTGGTTTTCTTGGATCTAATCTTGTTTATGACTTCATGAATCTGGGCGAGTCACTTTTTGGTGGGCAGGCGATCAATTCAGCTCTCCCAAACAGACCTGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGACTGCAAGTTCAACCACCCAAAAGAAAGAATAGCTCAATCATTAATAAATCCACTTGGCCTTCCTGTGAGACCTGGGCAGGCTATATGCTCTTATTACAGAATCTATGGAATGTGCAAGTTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGACTATCCCTCAGAACTATGGCTTGACCTCACCTGCTCTATCTGTACTTGACACTCCTCTCATTGCTAATCCCAGAGGGTTATCAAATGTACAACCACCTGAGACATCTCCTTCTAAATTATCAACTGACAAGCTTCGGCATTCTGATACAAAAGCTGCTACAGAAGATTCATCCAAACAAGCTGATACTACGTCAAATTCCTTCCCAGCCTCCTCAGAGCCTTTACATGACTAA 1257 0.4391 MPENRQVLRNADSTPSGDNIEEAIQRLKINDNWDRDAAAQSAQYPDRPGEPDCLYYLRTGMCGYGSNCRYHHPAHISIGTHYGEELPQRVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVSFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHGSLGAYPLAGSPTSTIIPASSLPYAGGFPGWSVPRMSYLSGQGLQSYVPPFLSSSQGIIPVQSWNNYMGSMNPAMPTGFLGSNLVYDFMNLGESLFGGQAINSALPNRPDQPECRYFMSTGTCKYGSDCKFNHPKERIAQSLINPLGLPVRPGQAICSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPALSVLDTPLIANPRGLSNVQPPETSPSKLSTDKLRHSDTKAATEDSSKQADTTSNSFPASSEPLHD 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3141 418 Gene3D - 121 168 - -
Ssu6g3141 418 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Ssu6g3141 418 SUPERFAMILY CCCH zinc finger 311 339 IPR036855 GO:0046872
Ssu6g3141 418 MobiDBLite consensus disorder prediction 365 418 - -
Ssu6g3141 418 MobiDBLite consensus disorder prediction 381 397 - -
Ssu6g3141 418 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 5 402 - -
Ssu6g3141 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 315 339 IPR000571 GO:0046872
Ssu6g3141 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Ssu6g3141 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Ssu6g3141 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 297 IPR000571 GO:0046872
Ssu6g3141 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Ssu6g3141 418 SMART c3hfinal6 313 340 IPR000571 GO:0046872
Ssu6g3141 418 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Ssu6g3141 418 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Ssu6g3141 418 SMART c3hfinal6 270 297 IPR000571 GO:0046872
Ssu6g3141 418 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Ssu6g3141 418 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Ssu6g3141 418 ProSiteProfiles Zinc finger C3H1-type profile. 313 341 IPR000571 GO:0046872
Ssu6g3141 418 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Ssu6g3141 418 Gene3D - 42 120 - -
Ssu6g3141 418 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Ssu6g3141 418 PANTHER PROTEIN PHOSPHATASE RELATED 5 402 - -
Ssu6g3141 418 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Ssu6g3141 418 MobiDBLite consensus disorder prediction 365 380 - -
Ssu6g3141 418 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Ssu6g3141 418 Gene3D - 264 342 - -
Ssu6g3141 418 SUPERFAMILY CCCH zinc finger 274 299 IPR036855 GO:0046872
Ssu6g3141 418 MobiDBLite consensus disorder prediction 398 418 - -
Ssu6g3141 418 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3141 Ssu-Chr6 71268857 71272877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3141 1 399 C3H Transcription Factor Family AT1G04990 46.963 2.61e-119 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu6g3141 zf-CCCH 2.7e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3141 - - vra:106765262 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3141 6 71268857 71272877 Ssu6g3141 6 71268857 71272877 ECH