Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3140 ATGCGCCGAGGGAGAGCCACCGCCGCCGCAGTCGCCGCGGATCCCGCGGCGGAGCAGGACCCTCCGGCGAAGGAGACGCGGTTCCGCGGCGTGAGGAAGCGGCCGTGGGGGCGATTCGCGGCGGAGATTAGAGATCCGTGGAAGAAAGCGCGCGTGTGGCTGGGGACGTTCGATTCCGCCGAGGACGCCGCGCGGGCCTACGACGCCGCGGCCCGATCCTTCCGGGGCCCCAAAGCGAAGACCAATTTCCCGTTCCCCACCCCCGAAACGGACCACTCCCACTCCCAGATTCCCCTCTACCAGGCCCACCACGGGTTCTCCAAGTTCGACCGGGTCCAGGTGAACCGGCCCACCACCAGCGGCATGAGCAGCACGGTCGAGTCCTTCAGCGGGCCTAGGGTTCCGTCCTCTTCCACGCTCCACCCTCGGAAGCCGGTTAGCACTGTCGTCCCCCTCGACGATTGCCACAGCGATTGCGATTCGTCGTCCTCCGTCGTCGACGACGAGGACTGCGTGCTCACGTCGTCGTTCCGGCAACCTCTGCCGTTCGATCTCAACCTGCCGCCGCTCcccgacgacgacgacgacctTCCGGCCACCGCGCTCTGCCTCTGA 615 0.6585 MRRGRATAAAVAADPAAEQDPPAKETRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAARSFRGPKAKTNFPFPTPETDHSHSQIPLYQAHHGFSKFDRVQVNRPTTSGMSSTVESFSGPRVPSSSTLHPRKPVSTVVPLDDCHSDCDSSSSVVDDEDCVLTSSFRQPLPFDLNLPPLPDDDDDLPATALCL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3140 204 MobiDBLite consensus disorder prediction 118 146 - -
Ssu6g3140 204 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Ssu6g3140 204 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Ssu6g3140 204 MobiDBLite consensus disorder prediction 118 144 - -
Ssu6g3140 204 CDD AP2 26 84 IPR001471 GO:0003700|GO:0006355
Ssu6g3140 204 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Ssu6g3140 204 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Ssu6g3140 204 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Ssu6g3140 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 13 183 - -
Ssu6g3140 204 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 183 - -
Ssu6g3140 204 MobiDBLite consensus disorder prediction 1 28 - -
Ssu6g3140 204 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Ssu6g3140 204 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3140 Ssu-Chr6 71253694 71254308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3140 1 204 AP2-EREBP Transcription Factor Family AT1G50640 50.220 3.97e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu6g3140 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3140 K09286 - gmx:100795557 219.164