Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3139 ATGGAAAACTCAGACCACGACGAACCTGACAAGAAGAGGCCTCATCTCACCTCTGTTTCTTCCCGCACGCCTCGAAGCTCCACCAACTCTCCCACCAGCAACAAAACCGCTGATGCAGGAGTCTTGCAGTTCCAGAATCAGCAGCTTGTTCAACAGATAGACATCCAAAAACATGCTTTGCATGATCTCGaagaaaaaattagagaattaaAAGGAAAGCAGAGTTCTTATGATGACTTGTTAATTTCATTGAATCAACTCTGGATTCAGTTGGTTGACGATATGATTCTTCTTGGAATACGAGCTGGGAGAGGCAAAGGCAAAGACACATTGCAACGTTTGACTTACATTGATAATCCTCAAGGTTCACTTCCTTTATGTCCTGCTGAGGATATATTTCTATGTAGATTAATCCAGAAAGATTCTATTAAAGGAATCAGCGGTGATGAGATCATTAATTATGTTGAGGAGGTCCTTGCTTTGCGTCAGTCATCTACAAGGGAATTGATGAAACTTCTGCTAGATACCATTGATGATCAGATGGAAAGAGCAGGCAGTATAGCTCAGGCTTTACATGGAGATTTATCTTCAGAAGATGCTATAATCCAAATGACTAAGATTGATGATATGATGAAAGAGGAGGCAGATAATTTATGCGAAGTGATTGATACTCTCCATGCGAAACATAAAGAGTATACTGTTGGCATTCAAAATTCTATCAATGAGTGCTTACAAGATCAATCTGATATTAAACGCCTTGCAGGTGAGCTTGATGAGATTGTGGCTGAACTTGAAGAGAGTAGAAGAAAACTAGTCAATCTGGAAATGCAAAAGGATGCAGCAATAGGGATGAATTCCCCCAAAGCAGATGCAGTGAATGGAAACCTGTCTCCTGAAAACCCTGCAGACAGGACAATGGGTTTGCGTGAGTTGAAGGATTCAATTGAGGAAGCAAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATGCACGGGAAGACAATCAGACCTTGACAAAGCAATTCCAAGATCTTCAGAATGAACTGAAAGATGACAAGTATGTACGCTCTTCCCGAATATACTCTTTGGCTAATGATCAACTTCAACATTGGATGACTGAATTGGACCGTTATAAAGCATTGGTAGAGTCTTTGCAGGCTGGCAGTGTTCATGTTGCAAAATGGGAGAATGaactaaatttgaaattggAGTCTGCTGACACTGCAAGGCATATCCTTGACAATTCTGACCATAGGATTGATGAGCTAGAGCTTCAGTTGCAGAAGTGTATTATTGAAAAGAATGATCTTGAAATTAAGATGGAAGAAGCTAAGCAGGATACTGGGAGGAAAGATATCAAATCTGAGTTTCGTGTTATGGCTTCAGCTTTATCTAAAGAAATGGGGATGATGGAAGCTCAATTAAAGCGATGGAAAGATGCAGCTCATGAGGCTGTATCATTACACGAGAAAGCACATTCACTAAGAGAAGCGTTGAGCATGAAGACAAGCGAACTTAAGAGCCTTGCGAACAAATGTGCTGAACAGGTTTTGGAAATCAAgtctttaaaaacattgACTGAAAAGTTACAGAAGGAGAATCTGGAATTAGAATTTGTTCTGGATATGCATGGCCAGGAGAATTATGATAAAAGATATTCAGAAGTTAGAGAATCTGAAAGTAAAGCTCACTCTCAGGCTGAAATACTGAAAAATGCTTTAGATGAACATAGCCTAGAGTTGAGAGTAAAAGCGGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCTGCCGCAGAAGCTGAAATAGAGGACTTGAGGGTCAAGCTGGACGCATCTGAGAGGGATATTTTGGAGCTGACTGAGGCTGTTAAAGTTAAAGATGCTGATGCAGAGGCATATATATCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAACATCTGATGGACCAGGTGACTGAGAGGGATGACTATAATATTAAGCTTGTATCAGATAGCGTGAAGACAAAACAGGCGCATAACACTTTACTGTCTCAGAAGCAGGCCTTAGCTAAGCAACTTCAACAAATTAATTCTTCAATAGAAAATTCAAAGATGAGGATTACACACAGTGAAGAGCAGATGAAAGCTATTCTATCTGACGCCATTAAATGTAATCAAGAAGAAAAACACCTTGCAGTCACGCTAGAATTCACAAAGTGGGAATTGGCTGACGCTGAGAAGGAATTGAAGTTGCTCAAGTATGCTGTTTCTTCTTCAGAGAAAGAATACGATCAAATTCAGAAAGATACGGAAGCTATTGAAATGGAATTGGAAAGTGAAagGAGTTTACGGAAGAAGCTTGAGGAAGAACTAAGGGAATTGAACAGCAAAATTGCTGAGCTGACTTCTGAAACTGGAGAGACCACAATTCAAAAACTCGAAAAAGAAATACGAATTTGCAAGAACATGATCAAGTGTACGGTCTGCACTGATCGTCCAAAGGAGGTTGTGATTGTCAAGTGCTATCATCTGTTTTGCAATCCATGCATTCAGAGAAATCTAGAGCTTCGCCACCGCAAATGTCCTGCATGTGGAACAGGATTTGGACAAAGTGATGTTCGCTTTGTTAAGATATGA 2646 0.3968 MENSDHDEPDKKRPHLTSVSSRTPRSSTNSPTSNKTADAGVLQFQNQQLVQQIDIQKHALHDLEEKIRELKGKQSSYDDLLISLNQLWIQLVDDMILLGIRAGRGKGKDTLQRLTYIDNPQGSLPLCPAEDIFLCRLIQKDSIKGISGDEIINYVEEVLALRQSSTRELMKLLLDTIDDQMERAGSIAQALHGDLSSEDAIIQMTKIDDMMKEEADNLCEVIDTLHAKHKEYTVGIQNSINECLQDQSDIKRLAGELDEIVAELEESRRKLVNLEMQKDAAIGMNSPKADAVNGNLSPENPADRTMGLRELKDSIEEAKIVDADRLSELQDAREDNQTLTKQFQDLQNELKDDKYVRSSRIYSLANDQLQHWMTELDRYKALVESLQAGSVHVAKWENELNLKLESADTARHILDNSDHRIDELELQLQKCIIEKNDLEIKMEEAKQDTGRKDIKSEFRVMASALSKEMGMMEAQLKRWKDAAHEAVSLHEKAHSLREALSMKTSELKSLANKCAEQVLEIKSLKTLTEKLQKENLELEFVLDMHGQENYDKRYSEVRESESKAHSQAEILKNALDEHSLELRVKAANEAEAACEQRLSAAEAEIEDLRVKLDASERDILELTEAVKVKDADAEAYISEIETIGQAYEDMQTQNQHLMDQVTERDDYNIKLVSDSVKTKQAHNTLLSQKQALAKQLQQINSSIENSKMRITHSEEQMKAILSDAIKCNQEEKHLAVTLEFTKWELADAEKELKLLKYAVSSSEKEYDQIQKDTEAIEMELESERSLRKKLEEELRELNSKIAELTSETGETTIQKLEKEIRICKNMIKCTVCTDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTGFGQSDVRFVKI 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3139 881 Coils Coil 745 807 - -
Ssu6g3139 881 PANTHER RING FINGER PROTEIN-RELATED 10 881 IPR013956 GO:0004842|GO:0010390
Ssu6g3139 881 Coils Coil 524 544 - -
Ssu6g3139 881 ProSitePatterns Zinc finger RING-type signature. 844 853 IPR017907 -
Ssu6g3139 881 SUPERFAMILY RING/U-box 828 872 - -
Ssu6g3139 881 Coils Coil 689 709 - -
Ssu6g3139 881 CDD RING-HC_BRE1_like 827 868 - -
Ssu6g3139 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 810 880 IPR013083 -
Ssu6g3139 881 ProSiteProfiles Zinc finger RING-type profile. 829 867 IPR001841 -
Ssu6g3139 881 Coils Coil 46 80 - -
Ssu6g3139 881 SMART ring_2 829 867 IPR001841 -
Ssu6g3139 881 Coils Coil 584 625 - -
Ssu6g3139 881 Pfam Zinc finger, C3HC4 type (RING finger) 828 869 - -
Ssu6g3139 881 Coils Coil 329 349 - -
Ssu6g3139 881 MobiDBLite consensus disorder prediction 1 36 - -
Ssu6g3139 881 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 10 881 - -
Ssu6g3139 881 Coils Coil 250 284 - -
Ssu6g3139 881 MobiDBLite consensus disorder prediction 285 304 - -
Ssu6g3139 881 MobiDBLite consensus disorder prediction 1 17 - -
Ssu6g3139 881 Coils Coil 414 448 - -
Ssu6g3139 881 MobiDBLite consensus disorder prediction 19 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3139 Ssu-Chr6 71231695 71241302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3139 766 876 RAD5 or RAD16-like Gene Family AT5G05130 23.077 6.75e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3139 K10696 - gmx:100796610 1515.36