Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3133 ATGCGCTCCGGCGAGACGCCCAAACTTCCTGCTTTCGTACACTTGCCGCGCCTTCTTTCTCTCCCACCCCCCCGCGCTTCCAAGACCCCTTCCACGGCCAACCCATCTCTCGTTTCTCTCAAAGTTCGATGCTTTCGCGCTTCTGAGGCCACCCCGACCAAGCGGATCCCTCGGCTCGTGAGGACCGAAGTTCAGCACGCTCTGATGGACTACCTGCACTACACGCGTGGCTACACCTTCTCCGACGCCGAGTACGTCAGCAAGAACTCGCCGCGTTTCGTTGAATCCTTGGTGTCGATGATTGACGACAAAGACGATGTTCCTCGATCGTTGAGGAAGTTCTTCAGGTACAATCCCATCAACGAGTTTGAACCGTTTCTCGAGAGTTTGGGGATTGGCCCTTCCGAGTTGCCTTTAGTTCTCCCTCGCGGCATGATTTATTTGGAGGATGATTATGTGTTGCTCGATAATTTCCGTGTTTTGTGCAATTATGGGGTGCCAAGGAATAGAATGGGGAGGTTTTACAAGGAGGCAAAAGAGATTTTCGGGTATGCTAGTGGGTTGTTGTCGTCCAAGTTAGGAGCTTATGATAATTTGGGTTTGAGTAGATCAATTGTTGTCAAGCTTGTTGTTTGTTGTCCTTTGCTTTTGGTCGGTGATGTCGATTGTGAATTTGTTGCTGTGCTTCATTGGTTGAAGAGAATTGGGATTGAAAGTGATTGGATCGTGAATTACTTGTCTTGTTCAAGGACATATAGCTGGAAAAGAATGCTTGATACCATGCAGTTTCTTCATAAAGTGGGCTATTCTGAGGAACAAATGCACGATTTGTTTACGGCAAATCCTAAGTTGTTGTTGGAAGGTTTTGGGAGGAAGCTCTACTTAGTTTTTGGTCAATTGCTTAAATTAGGTGTTGAGATGAACGGGATTTATTCTTGTTTTGTAGAGTATCCTTGCATCTTGTCAAATAAGTGTGCGAGAAATCTGTTGAGAGTGATTGGTTTTTTCTGTGCTATTGGAATGGGAAAAGATGACATTGCACACATTTTGTCTAACTACTTGCATCTCCTGAGTACACATTCTCTGAAAGGTCATAAAACTGTTTGTAAGGAGTTAAAAGTTGGAAAAGCTGATTTGTGCCAAATCATAAGGGATGATCCGTTCAAGCTAATTAGTTTGGCATCAAAACAGGAACAAAGGGGCAATGAGAAGATACACAGTCATGACCCACgtaattatttggaaaaaacaACTTTCTTGCTGAAATTGGGATATACTGAGAACTCTGAGGAGATGGCAAAAGCATTAAAAATGTTTCGGGGGAGAGGTGATCAACTACAAGAGAGGTTTGATTGCCTGGTAGAAGCTGGTTTGGACTATAACAGTGTGATTGAAATGATAAAACGAGCTCCTATGATTCTAAACCAGAGCAAAGCTATGATTAAAAGGAAGGTTGATTTCTTAAGAGACGTTTTAGGTTACCCACTAGAATACCTCGTGGGATTCCCAACGTACTTTTGCCATGATTtggaaaaaattgttgaaaaacttTCAATGTATGCCTGGTTGAAGGAGAGGAATGCAGTAAATCCTACGTTAACCCTGGGTACCATAGTTGGATCGGGTGAAAAACGCTTTGTAAAATACTTTGTGAATGTGCATCCTCAAGGTCCAGCTGTCTGGAAGGATTTAAAAAGGTTATCAATAAAGATAAGAACTAATAGCTCCTTATAA 1734 0.4239 MRSGETPKLPAFVHLPRLLSLPPPRASKTPSTANPSLVSLKVRCFRASEATPTKRIPRLVRTEVQHALMDYLHYTRGYTFSDAEYVSKNSPRFVESLVSMIDDKDDVPRSLRKFFRYNPINEFEPFLESLGIGPSELPLVLPRGMIYLEDDYVLLDNFRVLCNYGVPRNRMGRFYKEAKEIFGYASGLLSSKLGAYDNLGLSRSIVVKLVVCCPLLLVGDVDCEFVAVLHWLKRIGIESDWIVNYLSCSRTYSWKRMLDTMQFLHKVGYSEEQMHDLFTANPKLLLEGFGRKLYLVFGQLLKLGVEMNGIYSCFVEYPCILSNKCARNLLRVIGFFCAIGMGKDDIAHILSNYLHLLSTHSLKGHKTVCKELKVGKADLCQIIRDDPFKLISLASKQEQRGNEKIHSHDPRNYLEKTTFLLKLGYTENSEEMAKALKMFRGRGDQLQERFDCLVEAGLDYNSVIEMIKRAPMILNQSKAMIKRKVDFLRDVLGYPLEYLVGFPTYFCHDLEKIVEKLSMYAWLKERNAVNPTLTLGTIVGSGEKRFVKYFVNVHPQGPAVWKDLKRLSIKIRTNSSL 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3133 577 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 37 565 - -
Ssu6g3133 577 PANTHER CGI-12 PROTEIN-RELATED 37 565 IPR003690 GO:0003690|GO:0006355
Ssu6g3133 577 Pfam mTERF 441 528 IPR003690 GO:0003690|GO:0006355
Ssu6g3133 577 Pfam mTERF 261 490 IPR003690 GO:0003690|GO:0006355
Ssu6g3133 577 Gene3D Transcription termination factor 3, mitochondrial 294 563 IPR038538 -
Ssu6g3133 577 Gene3D Transcription termination factor 3, mitochondrial 107 293 IPR038538 -
Ssu6g3133 577 SMART mt_12 496 529 IPR003690 GO:0003690|GO:0006355
Ssu6g3133 577 SMART mt_12 207 238 IPR003690 GO:0003690|GO:0006355
Ssu6g3133 577 SMART mt_12 311 342 IPR003690 GO:0003690|GO:0006355
Ssu6g3133 577 SMART mt_12 429 459 IPR003690 GO:0003690|GO:0006355
Ssu6g3133 577 SMART mt_12 464 495 IPR003690 GO:0003690|GO:0006355
Ssu6g3133 577 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3133 Ssu-Chr6 71145081 71146896 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu6g3133 mTERF 5.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3133 - - gmx:100803162 876.7