Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3131 ATGATGTATTTGTCTGATGATCATGTTTTGCTTGACAATTTCCATGCTTTGAGTAACTATGGGGTTCCAAGAAATAGAGTAGGGAAAATTTACCAGGAGGCAAAGGAGGTTTTCGGGTATCCTAGTGGATTGTTGTTGTCGAAATTTCGAGCTTATGAGATTTTGGGTTTGAGTAGATCCATGGTCATCAAGCTTGTTGTTTGTTGCCCTCCACTTTTGGTTGGTGAAACAAACAGTGAATTGGTCATGGTTTTGGATTGGTTGAAGAAGATTGGTATTGAACATGATTGGATTGGGAATTACTTGTCTTGTTTGAAAACGTATGAGTCAAGAAGAATGCTTGGTGCTATGCAATTTCTTCATAAAGTGGGCTATTCTGAAGAACAGATGCACAATTTGTTCAAGGAAAATCCTGCATTATTATTGGAAGGTCTTGAGAAGAAGGTGTATGCATTTTTGCGTCTAGCATTTAAGTTAGGTCTCAATAAGAATGtgttttattcttcttttatagaATTCCCTTTATCTTGTCAAATAAGTGTGCAAAAAATCTTTTGGGAGTGA 564 0.3582 MMYLSDDHVLLDNFHALSNYGVPRNRVGKIYQEAKEVFGYPSGLLLSKFRAYEILGLSRSMVIKLVVCCPPLLVGETNSELVMVLDWLKKIGIEHDWIGNYLSCLKTYESRRMLGAMQFLHKVGYSEEQMHNLFKENPALLLEGLEKKVYAFLRLAFKLGLNKNVFYSSFIEFPLSCQISVQKIFWE 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3131 187 Pfam mTERF 15 146 IPR003690 GO:0003690|GO:0006355
Ssu6g3131 187 Gene3D Transcription termination factor 3, mitochondrial 2 185 IPR038538 -
Ssu6g3131 187 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 2 172 - -
Ssu6g3131 187 PANTHER CGI-12 PROTEIN-RELATED 2 172 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3131 Ssu-Chr6 71138626 71139189 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu6g3131 mTERF 9.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3131 - - gmx:100803162 248.825