Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3126 ATGGGTTTCACTGGGGAGTTGGTAAGAAGTGTCTTCTCCAAAAATCGTTCTGATGGGTCGCATGACAGCAAAGTGAGACGCAATAGTGCTGAAAATAGAAGATGGTTATCAGTTAGGTCATACTTGTGTGGTGATGAATTCAATTCAGTCCTTGCTGATAAAGATTCAGATTCAGTTGAGTGCTCTGGAGTCACGGTTACACAGTCCGTACAGGAGGACTTGAATGATAAAGGAGACACCGAGAGTGAAGAAACTGTGGAGAATGTAACACAGAAAAGGCCAAATTCAAAGTCCAAATCATTGAATGAGGAAGAAGCAGCTATTCTTATTCAATCAGGATTTAGAGGCTTCCTGTTGAAGCGTCAAAATGGAGAAGTCAGATCAAAAACTGGAAAAGACAAGTTCAATTTAGTAACTGAAAGTCCAGACAGAAAGTCCATGGGCACATCAGTTGAAGTCCAAACTGCAAACTCCACAGAAGTTTTCTCGGTTGAAGGAGAAAAAATGGGCATTTGCCACCGTCTTCCGCGCAGGACCAGAACTCAAGTAATAAAGCAAAAGGAAGACTGGGATGACAGCACTGTAAGTAGCTATGTTTCAAAAATGAGGATGCAGAATAGAATGGAGGCATCAACCAGGAGGGAAAGAGCGTTGGCCTATGCTTTCTCGCAACAGCTAAGAATCTGTCCAAAGAGAAAATCAACAAAACATAATAGCATGGAGTCCAATATGAGTTGGAGCTGGCTTGAGCGGTGGATGGCAACACGCCTTCCAGAGACCTCATCAGTTGAAAGCCATGCCATGAAGCAGTATGACCCTTCTAATAGTAATCAAAAATTCACTATCATGACAAGATTTTTAGATGCTGCTGGGGAAGAAAAGGAGAGCTGCGGGTCAAATGAAGTGCCCCTTCGTTTTGATAACTATtcaatcaattcacaagaagaaaaagttagCTTCAAACCACATACAGCAAAGACCAACTTCAAAGCTAGGAGAACTGTTTCAAGGCGGAAAACTGTGCCAAGTTATCAATTTCATGAAGAGCAGCCAAAGATAAGCAAGAGAGACTGTTCGGGCAATGCTGCCAAGGATATTAAGCCAAAGCAAAAGCGAGTGTGA 1122 0.4162 MGFTGELVRSVFSKNRSDGSHDSKVRRNSAENRRWLSVRSYLCGDEFNSVLADKDSDSVECSGVTVTQSVQEDLNDKGDTESEETVENVTQKRPNSKSKSLNEEEAAILIQSGFRGFLLKRQNGEVRSKTGKDKFNLVTESPDRKSMGTSVEVQTANSTEVFSVEGEKMGICHRLPRRTRTQVIKQKEDWDDSTVSSYVSKMRMQNRMEASTRRERALAYAFSQQLRICPKRKSTKHNSMESNMSWSWLERWMATRLPETSSVESHAMKQYDPSNSNQKFTIMTRFLDAAGEEKESCGSNEVPLRFDNYSINSQEEKVSFKPHTAKTNFKARRTVSRRKTVPSYQFHEEQPKISKRDCSGNAAKDIKPKQKRV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3126 373 MobiDBLite consensus disorder prediction 342 367 - -
Ssu6g3126 373 ProSiteProfiles IQ motif profile. 103 132 IPR000048 GO:0005515
Ssu6g3126 373 MobiDBLite consensus disorder prediction 322 373 - -
Ssu6g3126 373 MobiDBLite consensus disorder prediction 72 103 - -
Ssu6g3126 373 PANTHER IQ-DOMAIN 5-RELATED 1 370 - -
Ssu6g3126 373 PANTHER IQ-DOMAIN 33 1 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3126 Ssu-Chr6 71019943 71023307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3126 1 353 IQD Protein Family AT5G35670 40.048 9.16e-79 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3126 - - gsj:114383427 637.106