Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3105 ATGGCCTCTTACTACTTGCTCCTGCTTGTTCTTGTCGGTGCAACTGCAGCTTCTGGGGCAGAGCTATGCACAGACTTTTACTCCTGTAGCTGCCCAAACTTGTTGCCAATAGTGAAGAAAGGAGTGACCAAAGCCGTTACAAAAGAACCACGCATGGGGGCTTCTTTGCTCCGATTGCACTTCCATGATTGCTTTGTAAACGGCTGTGATGCATCAATACTGTTGGATGATACACGCAACTTCATTGGAGAGCAAACAGCAGCAGCTAACAACCAATCGGCTAGAGGGTTCAACGTGATTGATGATATCAAAGCCAATGTGGAGAAAGAATGCCCCGGAGTGGTGTCCTGTGCTGATATTCTTGCTCTGGCAGCTCGAGATTCTGTagtttatTTAGGAGGCCCATCGTGGGAAGTGGGGTTGGGGAGAAGAGATTCTACTAAAGCAAGCAGAAGTGATGCTAATAATAGTATTCCCGCGCCTTTCTTCAGTCTGAAGGCTCTGATACAGAATTTTCATAACCAAGGCCTCTCGGTTACAGACTTGGTGGCTCTTTCAGGGGCACACACTATTGGCCTGGCTCAGTGCAAAAATTTCCGAGCACACATCTACAATGACTCCAACGTTGACCCCTCCTACCGGAAGTTCCTGCAGAGCAAGTGCCCCAAAAGTGGAAATGACAATATACACGAACCCCTTGACGACCAAACTCCAATCCATTTCGATAATCTATACTTCCAGAATTTGGTGAGGAAAAAGGCTCTTCTTCATTCCGATCAGGAGCTGTTCAATGGCAGTTCTACTGACAATCTTGTAAGAAAATACTCTACCAATACTGCTGCCTTCTTTGAAGACTTTGCCAAGGGCATGGTCAAATTGAGCAACATCAAGCCTCTCACAGGAAGCAAGGGCCAGATCAGAATCAATTGCGGGAAAGTCAATTAA 945 0.4624 MASYYLLLLVLVGATAASGAELCTDFYSCSCPNLLPIVKKGVTKAVTKEPRMGASLLRLHFHDCFVNGCDASILLDDTRNFIGEQTAAANNQSARGFNVIDDIKANVEKECPGVVSCADILALAARDSVVYLGGPSWEVGLGRRDSTKASRSDANNSIPAPFFSLKALIQNFHNQGLSVTDLVALSGAHTIGLAQCKNFRAHIYNDSNVDPSYRKFLQSKCPKSGNDNIHEPLDDQTPIHFDNLYFQNLVRKKALLHSDQELFNGSSTDNLVRKYSTNTAAFFEDFAKGMVKLSNIKPLTGSKGQIRINCGKVN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3105 314 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601
Ssu6g3105 314 Gene3D - 25 310 - -
Ssu6g3105 314 PRINTS Haem peroxidase superfamily signature 234 249 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu6g3105 314 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu6g3105 314 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu6g3105 314 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu6g3105 314 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu6g3105 314 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Ssu6g3105 314 Gene3D Peroxidase, domain 2 159 293 - -
Ssu6g3105 314 SUPERFAMILY Heme-dependent peroxidases 22 314 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu6g3105 314 CDD secretory_peroxidase 25 313 IPR033905 GO:0004601|GO:0042744
Ssu6g3105 314 Pfam Peroxidase 38 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu6g3105 314 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu6g3105 314 PRINTS Plant peroxidase signature 248 265 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu6g3105 314 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu6g3105 314 PRINTS Plant peroxidase signature 288 301 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu6g3105 314 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu6g3105 314 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu6g3105 314 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu6g3105 314 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu6g3105 314 PRINTS Plant peroxidase signature 232 247 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu6g3105 314 PANTHER PEROXIDASE 72-RELATED 5 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu6g3105 314 ProSiteProfiles Plant heme peroxidase family profile. 21 314 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu6g3105 314 PANTHER PEROXIDASE 5 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3105 Ssu-Chr6 70596180 70599486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3105 20 314 Peroxidase AT5G05340 60.403 1.10e-129 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3105 K00430 - gmx:100793973 565.459