Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3102 ATGGTTTCCGAAGAGCAAAAGAGAGCAGCACTGCATGAGAAGCTGCAACATCTTCGTTCTATTACTAACTCTCATGCTCTAAACAAAACCTCGATCATAATCGATGCATCAAAGTATATCGAAAAGTTAAAGGAAAAAGTAGAAAGACTGAATCAAGAGATAGACTCGGCAGGAACTTCAAGTGTCCACAACCCCTTGCCTATGGTTACAGTAGAAACCCTAGAAAAGGGATttcttataaatgttttctCAGCAAAAGGGTGTTCAGGTCTGCTTGTTTCCATATTGGAGGCCTTTGAAGAGATGAGACTCACTGTGCTGGAAGCTAGGGTTTCTTGTACAGACACTTTTCGATTTCAAGCAGTTGGAGAAAATGAAGAACAAGGGGAGACAATTGATGCACATGCTGTGAAACAAGCAGTGGGACAAGCAATAAAGAACTGGAGCAAAAGTGGCGATCAAGACTAA 468 0.406 MVSEEQKRAALHEKLQHLRSITNSHALNKTSIIIDASKYIEKLKEKVERLNQEIDSAGTSSVHNPLPMVTVETLEKGFLINVFSAKGCSGLLVSILEAFEEMRLTVLEARVSCTDTFRFQAVGENEEQGETIDAHAVKQAVGQAIKNWSKSGDQD 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3102 155 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 2 154 - -
Ssu6g3102 155 Gene3D - 1 63 IPR036638 GO:0046983
Ssu6g3102 155 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 154 - -
Ssu6g3102 155 Coils Coil 33 60 - -
Ssu6g3102 155 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 61 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3102 Ssu-Chr6 70575736 70577236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3102 1 152 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 27.879 3.17e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3102 - - gmx:100306253 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3102 6 70575736 70577236 Ssu4g2472 4 62078262 62080018 ECH
Ssu3g0998 3 23468600 23470234 Ssu6g3102 6 70575736 70577236 ECH
Ssu4g2472 4 62078262 62080018 Ssu6g3102 6 70575736 70577236 ECH
Ssu6g2747 6 63905283 63907253 Ssu6g3102 6 70575736 70577236 ECH
Ssu9g1278 9 46503771 46504963 Ssu6g3102 6 70575736 70577236 ECH
Ssu6g3102 6 70575736 70577236 Ssu6g3102 6 70575736 70577236 ECH
Ssu9g1656 9 53413570 53414754 Ssu6g3102 6 70575736 70577236 PCT