Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3100 ATGTCGCCGGCGCCCGGAGCACGCGTCCCTCTCCTCCCGGGATCCAAGGGTGTTCCGCCGGCGACCGTGCCCGGCGCCGTGTTCAATGTCGCCACCAGCATTATCGGTGCCGGGATTATGTCTCTTCCGGCGACTCTCAAGGTTCTCGGTGTGATTCCCGCGCTGGTGCTGATTCTGGTGATTGCGTTTCTGGCGGAACTGTCGGTGGAGTTCCTCATGAGGTTCACGCGTGCCGGCGAAACGACGACGTATGCCGGCGTCATGAGAGAGGCCTTCGGACCCTTGGGAGCAGTAGCAGCTCAACTCGCTGTCGTAATTACTAATCTCGGCTGTTTAATTATGTACCTTATTATTATTGCGGATGTGTTTTCTGGAAATCAACGTGAAGGGGAAGTGCACTTGGGTATTTTGCGACAGTGGTTTGGAATTCACTGGTGGAACTCACGGGAATTTGCTCTGTTCGTCACCTTGGTCTTAATTTTGCTTCCATTGGTCTTGTTTCGTCGCGTAGAGTCCTTGAAGTTCAGTTCTGCAATATCAACTCTTCTTGCTGTGGCCTTTGTTACAATATGTACTGTGTTGGCAATATTTGCTATTGTAGAAGGCAGAACAGAGTCTCCCAGATTGTTTCCTAGTTTGGAGCACCATACCTCTTTCTTGGATCTGTTTACTGCAGTTCCAGTCATAGTCACAGCCTACACATTTCATTTTAATGTGCATCCAATTGGGTTTGAGCTTGCCAAGCCGTCTGAGATGACAACAGCTGTTCGAATAGCACTGCTGCTTTGTGCTGTCATTTACTTTTCTATCGGCCTATTTGGGTACCTCTTGTTTGGGGATTCAACACAGTCTGACATTCTCGTCAATTTCGACCAGAATGCTAGTTCTGCGCTTGGTTCCTTGCTCAATATTTTAGTCCGTTTAAGCTATGCCTTACATGTTATGCTGGCTTTCCCTCTCCTGAACTTCTCTTTGAGAACCAACATAGATGAATTCTTCTTCCCCAAGAGGCCTATGCTAGCCACAGACAGCAGGCGATTTGTGAGCCTCACTCTAGTGCTGCTAGTCTTAAGCTACATTGCTGCTATTGTAGTACCAGATATTTGGTACATCTTTCAGTTTATGGGGTCAACATCTGCAGTGTGCCTTGCCTTTGTCTTCCCTGGTGCTATTGTTCTAAGGGATTCTTACCGTATATCAACAAGAAGGGACAAAATTATTGCACTCGTTATGGTTATACTAGCTGCAATAACAAGTGTGGTTGCTATCTCCACCAACATATACAAAGCTTTACAATAG 1299 0.4719 MSPAPGARVPLLPGSKGVPPATVPGAVFNVATSIIGAGIMSLPATLKVLGVIPALVLILVIAFLAELSVEFLMRFTRAGETTTYAGVMREAFGPLGAVAAQLAVVITNLGCLIMYLIIIADVFSGNQREGEVHLGILRQWFGIHWWNSREFALFVTLVLILLPLVLFRRVESLKFSSAISTLLAVAFVTICTVLAIFAIVEGRTESPRLFPSLEHHTSFLDLFTAVPVIVTAYTFHFNVHPIGFELAKPSEMTTAVRIALLLCAVIYFSIGLFGYLLFGDSTQSDILVNFDQNASSALGSLLNILVRLSYALHVMLAFPLLNFSLRTNIDEFFFPKRPMLATDSRRFVSLTLVLLVLSYIAAIVVPDIWYIFQFMGSTSAVCLAFVFPGAIVLRDSYRISTRRDKIIALVMVILAAITSVVAISTNIYKALQ 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3100 432 Pfam Transmembrane amino acid transporter protein 21 418 IPR013057 -
Ssu6g3100 432 PANTHER AMINO ACID TRANSPORTER 3 431 - -
Ssu6g3100 432 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 3 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3100 Ssu-Chr6 70539753 70542367 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3100 13 429 Amino Acid or Auxin Permease AAAP Family AT3G56200 59.472 5.31e-180 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3100 - - gmx:100800330 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3100 6 70539753 70542367 Ssu9g1654 9 53382411 53386196 PCT