Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3087 ATGGCTGTAAAATCAAGTTCCTACGATGCGTTCCTCAGCTTCAGAGGCTCAGACACACGCCATGGTTTTACCGGCCATCTCTACAAAGCTCTTTGTGACAGCGGAATCTACactttcattgatgatgaggagcTTCAGAGGGGAGAGGAAATAACACCAGCACTTGTGAAGGCAATTGAAGGGTCCAGGATTGCAATCATTGTGCTCTCTAAAGACTATGCTTCTTCCTCGTTTTGCTTAGATGAACTTGCAACCATCCTTGACTACAAGAGCAAAGGGCTGTTGGTGATACCTGTCTTTTATAAGGTCAATCCTTCTGACGTCCGACACCAGAAAGGTAGTTATGAAAAAGCATTGGCTAAGCATCAAGAAAGATTGAAGCATAACATGGACAAGTTGCAGAAATGGAAGATGGCTCTGCGTCAAGTAGCCGACTTATCTGGCTATCATTTACAAGATGGAGATGAATATGAATACAAGTTTATTGTGAGTGTTGTCGACCTCGTCTCAGACAAGATTAATCCTGCTCGTTTACATGTTGGGGATTATTTGGTTGGATTAGAGTCACGAGTAACAGAAGTAATGAAGCTTTTGGATGTTGGATCTGATGATGATGGTGTCCACATGATAGGGATCCACGGAATGGGTGGGGTAGGAAAATCAACACTTGCTCGAGCTGCCTATAATAATTTGAttgctcaaaattttgatgGTTTGTGTTATCTTGAAAAGGTGAGAGAAGAATCACACAAACATGGGTTAAAACACCTCCAAAGCGTCCTTCTACAGGAAATACTTAAGAAGGAAATCAAGGTAGCAAGTGTTGATAAAGGAGCTTTAATGATACCACAAAGGCTCCACGGAAAGAAGGTTCTCTTGGTTCTAGATGATGTTGACGAACACGAGCAATTACAAGCAATTGTTGGAAGTCCGGATTGGTTTGGTCCTGGCAGCAGAGTCATCATCACCACTCGGGACAAACAACTGCTGACATCTCATGAGGTTGAAAGAACATATGAGGTGAACGAATTGAATGAGAACGATGCTCTTCAGTTACTTACATGGAAAGCTTTTAAAGAGGAAAAGGCTGATCCAACTTATGCGGAAGTCTTGAAACGTGTGGTAACTTACGCTTCTGGCCTTCCATTGGCCTTGGAAGTAATAGGTTccaacttgtttcgaaaaagtatTAAAGAATGGGAATCTGCCATAAATCAGTATAAAAGAATTCCTCATAATCGAATCCAAGATATTCTTAAAGTAAGCTTTGATGCTTTGCAGGATGAAGAGAAAAGTGTTTTTCTTGACATTGCTTGTTGCTTGAAAGGATATAAATTGACAGAGGTTGAAGTTATACTTGGTGCTCTTTATGATGACAGCATGGAACATCATATTGGAGTGTTAGTTGAAAAATCTCTCATAAAGGTTGATCAGTGTGGTACAGTTGAATTGCATGACTTGATTCAGGACATGGGTAGACAAATTGACCAGATGGAATCACCAAAAAACCCCGGGAAGCGCAGGAGATTATGGTTACCAAAGGATATAATTCAAGTTTTAGAAGACAACACAGGAACTAGGGAAATTGAAATTATCTATCTGGATGTCCCCATATCTGACGAAGAAGAAACCATAGAATGGGATGGAAACGCCTTCAAGGAGATGAAAAGgcttaaaatacttattattaaaagtggtaAATTTTCTGAAGGTCCCAAATGTCTTCCAAATAGTTTGAGAGTACTGGAATGGTGGGGATATCCTTCACATTGTTTACCATCTGATTTTCAACCCAGGAAACTTGTCATTTGCAAGTTACCCAATGGTTTCATTACTTCATTTGAGTTGTTGGATGACTTATCAAAGGCAAGTTTAACGAGTACATTGTTCTCAacttgtaaattaataaattcacttcattccattcttatttctttcctttttccccTTTGTTTCTTTGCAGAAGAATCTAAcagttttgaattttggtggATGCAAAAGTTTAAAACAGATACCTGA 2019 0.37 MAVKSSSYDAFLSFRGSDTRHGFTGHLYKALCDSGIYTFIDDEELQRGEEITPALVKAIEGSRIAIIVLSKDYASSSFCLDELATILDYKSKGLLVIPVFYKVNPSDVRHQKGSYEKALAKHQERLKHNMDKLQKWKMALRQVADLSGYHLQDGDEYEYKFIVSVVDLVSDKINPARLHVGDYLVGLESRVTEVMKLLDVGSDDDGVHMIGIHGMGGVGKSTLARAAYNNLIAQNFDGLCYLEKVREESHKHGLKHLQSVLLQEILKKEIKVASVDKGALMIPQRLHGKKVLLVLDDVDEHEQLQAIVGSPDWFGPGSRVIITTRDKQLLTSHEVERTYEVNELNENDALQLLTWKAFKEEKADPTYAEVLKRVVTYASGLPLALEVIGSNLFRKSIKEWESAINQYKRIPHNRIQDILKVSFDALQDEEKSVFLDIACCLKGYKLTEVEVILGALYDDSMEHHIGVLVEKSLIKVDQCGTVELHDLIQDMGRQIDQMESPKNPGKRRRLWLPKDIIQVLEDNTGTREIEIIYLDVPISDEEETIEWDGNAFKEMKRLKILIIKSGKFSEGPKCLPNSLRVLEWWGYPSHCLPSDFQPRKLVICKLPNGFITSFELLDDLSKASLTSTLFSTCKLINSLHSILISFLFPLCFFAEESNSFEFWWMQKFKTDT 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3087 672 Pfam NB-ARC domain 189 415 IPR002182 GO:0043531
Ssu6g3087 672 PRINTS Disease resistance protein signature 209 224 - -
Ssu6g3087 672 PRINTS Disease resistance protein signature 378 392 - -
Ssu6g3087 672 PRINTS Disease resistance protein signature 285 299 - -
Ssu6g3087 672 Gene3D - 175 338 IPR027417 -
Ssu6g3087 672 Gene3D - 5 174 IPR035897 -
Ssu6g3087 672 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 643 IPR044974 GO:0006952
Ssu6g3087 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 437 IPR027417 -
Ssu6g3087 672 SUPERFAMILY "Winged helix" DNA-binding domain 414 521 IPR036390 -
Ssu6g3087 672 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 11 643 - -
Ssu6g3087 672 ProSiteProfiles TIR domain profile. 6 173 IPR000157 GO:0007165
Ssu6g3087 672 Gene3D - 343 427 IPR042197 -
Ssu6g3087 672 Pfam TIR domain 8 174 IPR000157 GO:0007165
Ssu6g3087 672 SMART till_3 7 146 IPR000157 GO:0007165
Ssu6g3087 672 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 149 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3087 Ssu-Chr6 70398136 70400522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3087 5 608 WRKY Transcription Factor Family AT4G12020 28.846 1.45e-64 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3087 - - gmx:100792603 843.573