Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3083 ATGGAGAACAAGAACCTGACCTCAAAATGTTTTTGCCATAACCATTCTCAGATTTTGCAACTTGGGGTGAGAATTGCGGCAGATTGGCACCATATCTACCACAACCCACATCATTTTTTCCGGTTGTTTTTCTGTTTGTGGTTTCTTCTGGTCCCAGTGTTGGGTGAAGAACGTTGGGATGGAGTGGTCGTGACACAGTCAAACTTCCTAGCACTTCAAGCATTCAAGCAAGAGCTAGTTGATCCCAAAGGCTTCTTGAGAAGCTGGAATGACAGCGGCTATGGAGCTTGTTCCGGAGGTTGGGTTGGTATCAAGTGTGCTCAGGGACAGGTTATTGTGATCCAGCTTCCATGGAAGGGGTTGAAAGGGCATATCACTGAGAGGATTGGCCAACTTGGGGGGCTTCGAAAGCTTAGTCTTCACGACAACCAAATTGGTGGTTCAATCCCTTCAGCACTGGGACTTCTTCTCTACCTAAGAGGGGTTCAACTCTTCAACAATAGGTTCACAGGGTCCATCCCTCCTTCATTAGGCTCCTGTCCTTTGCTTCAGTCTTTAGATCTCAGTAACAATTTGCTCACCGGGACAATCCCTATGAGCCTTGGGAATGCCACTAAGCTTTATTGGCTTAACCTGAGCTTTAATTCCTTCTCTGGCCCAATACCAACTAGCCTAACTCGCTTAACTTCTCTCACCTACCTGTCTCTTCAACACAATAATCTCTCAGGCTCTATACCTAACACATGGGGTGATCATAACTTCTTCACTGGAAGCATTCCTGCTTCTTTGGGCAGCTTGAGTGAACTCACAGAGATTACTCTTAGTCATAACCAGTTTAGTGGAGCTATCCCAAATCAAATAGGAAACCTTTCTAGACTTAAGACAGTAGATTTTTCTAATAATGCCTTGAATGGAAGCTTGCCTGCTACTTTCTCTAATTTATCCTCACTCACCCTGCTGAATGTAGAGAACAACCACCTTGGCAATCAAATCCCAGAAACTTTAGGCAGATTGCATAATCTTTCTGTTCTAGTTCTGAGCAGAAACCAATTTAGTGGCCACATTCCTCAAAGTATTGGAAACATATCGAAGCTTACACAGCTTGATTTGTCACTGAATAATCTCAGTGGAGAAATTCCAGTCTCCTTTGACAATCTGCGTAGTCTTGGTTTCTTCAACGTTTCTCATAACAACCTCTCTGGTCCAGTACCAACCCTACTTGCCCATAAATTTAACTCAAGCTCATTTGTGGGAAATATTCAACTATGTGGGTATAGCCCTACAATCCCATGTCCCTCGCCAGCTCCTTCTGGTTCCCCTCCTGAAATATCAAAACACCATCATAAGAAACTAGGCACCAAAGACATAATTCTCATAGTTGCAGGAGTGCTCCTTGTGGTCCTGGTAACACTTTGCTGCATTCTGCTATTCTGCCTGATCAGAAAAAGAGCAACATCAAATGAAGAGGGTGGCCAGGCCACAGGGAGAGCATCTGCTGCCAGGACAGAAAAAGGAGTTCCTCCTGTTGCAGGTGAAGCTGAAGCAGGTGGTGAGGCTGGAGGTAAACTAGTCCATTTTGATGGACCATTGGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCAGAGATAATGGGAAAGAGTACATATGGAACTGTCTATAAGGCTACATTAGAGGATGGAAGTCAAGCTGCAGTGAAACGATTGAGGGAAAAGATCACTAAAGGTCAGAGAGAATTTGAATCTGAAGTTAGTGTTATAGGAAGAATTCGACACCCAAATCTTTTGGCATTAAGAGCCTATTACTTGGGACCCAAAGGAGAAAAGCTTCTAGTATTTGATTACATGCCTAAGGGAAGTCTTGCTTCTTTCCTACATGCTCGTGGGCCCGAAACAGCCATTGATTGGCCAACAAGGATGAAAATAGCACAGGGAATGGCTCGTGGCTTGTTATACCTTCATTCCCAAGAGAACATTATACATGGGAACCTTACGTCCAGCAATGTGCTGCTGGATGAGAGTACGAATGCTAAAATAGCTGATTTTGGTCTTTCTCGGTTGATGACAACTGCTGCTAATTCTAACGTGATTGCCACTGCCGGAGCATTGGGATACCGAGCACCTGAGCTCTCAAAGCTTAAAAAGGCCAACACAAAAACTGATGTATACAGTCTTGGTGTCATCTTGTTAGAACTCCTAACGGGGAAGCCACCTGGTGAGGCTATGAATGGCGTGGATTTACCTCAGTGGGTTGCCTCTATTGTCAAAGAGGAGTGGACAAATGAGGTTTTCGATGTAGAGTTGATGAGAGATGCTTCAACATATGGCGACGAGATGCTAAACACGTTGAAGCTTGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGGCCAGAAGTTCAGCAAGTCCTTCAGCAGCTAGAAGAGATTAGGCCAGAGATATCAGCCAGTTCGGGTGATGATGGAGCTATCCCTTCGACCAGTGAATAA 2490 0.4466 MENKNLTSKCFCHNHSQILQLGVRIAADWHHIYHNPHHFFRLFFCLWFLLVPVLGEERWDGVVVTQSNFLALQAFKQELVDPKGFLRSWNDSGYGACSGGWVGIKCAQGQVIVIQLPWKGLKGHITERIGQLGGLRKLSLHDNQIGGSIPSALGLLLYLRGVQLFNNRFTGSIPPSLGSCPLLQSLDLSNNLLTGTIPMSLGNATKLYWLNLSFNSFSGPIPTSLTRLTSLTYLSLQHNNLSGSIPNTWGDHNFFTGSIPASLGSLSELTEITLSHNQFSGAIPNQIGNLSRLKTVDFSNNALNGSLPATFSNLSSLTLLNVENNHLGNQIPETLGRLHNLSVLVLSRNQFSGHIPQSIGNISKLTQLDLSLNNLSGEIPVSFDNLRSLGFFNVSHNNLSGPVPTLLAHKFNSSSFVGNIQLCGYSPTIPCPSPAPSGSPPEISKHHHKKLGTKDIILIVAGVLLVVLVTLCCILLFCLIRKRATSNEEGGQATGRASAARTEKGVPPVAGEAEAGGEAGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQAAVKRLREKITKGQREFESEVSVIGRIRHPNLLALRAYYLGPKGEKLLVFDYMPKGSLASFLHARGPETAIDWPTRMKIAQGMARGLLYLHSQENIIHGNLTSSNVLLDESTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANTKTDVYSLGVILLELLTGKPPGEAMNGVDLPQWVASIVKEEWTNEVFDVELMRDASTYGDEMLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPEISASSGDDGAIPSTSE 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3083 829 SUPERFAMILY L domain-like 105 425 - -
Ssu6g3083 829 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 34 820 - -
Ssu6g3083 829 SMART LRR_typ_2 386 409 IPR003591 -
Ssu6g3083 829 SMART LRR_typ_2 132 156 IPR003591 -
Ssu6g3083 829 SMART LRR_typ_2 314 338 IPR003591 -
Ssu6g3083 829 SMART LRR_typ_2 228 252 IPR003591 -
Ssu6g3083 829 SMART LRR_typ_2 362 385 IPR003591 -
Ssu6g3083 829 SMART LRR_typ_2 266 289 IPR003591 -
Ssu6g3083 829 SMART LRR_typ_2 290 313 IPR003591 -
Ssu6g3083 829 Pfam Leucine rich repeat N-terminal domain 70 106 IPR013210 -
Ssu6g3083 829 Gene3D Ribonuclease Inhibitor 253 436 IPR032675 -
Ssu6g3083 829 Gene3D Transferase(Phosphotransferase) domain 1 617 821 - -
Ssu6g3083 829 PRINTS Leucine-rich repeat signature 362 375 - -
Ssu6g3083 829 PRINTS Leucine-rich repeat signature 183 196 - -
Ssu6g3083 829 Gene3D Phosphorylase Kinase; domain 1 545 616 - -
Ssu6g3083 829 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 34 820 - -
Ssu6g3083 829 CDD STKc_IRAK 545 810 - -
Ssu6g3083 829 SUPERFAMILY Protein kinase-like (PK-like) 543 811 IPR011009 -
Ssu6g3083 829 Pfam Protein tyrosine and serine/threonine kinase 542 807 IPR001245 GO:0004672|GO:0006468
Ssu6g3083 829 Pfam Leucine rich repeat 268 327 IPR001611 GO:0005515
Ssu6g3083 829 Pfam Leucine rich repeat 182 241 IPR001611 GO:0005515
Ssu6g3083 829 Pfam Leucine rich repeat 340 399 IPR001611 GO:0005515
Ssu6g3083 829 Gene3D Ribonuclease Inhibitor 65 252 IPR032675 -
Ssu6g3083 829 ProSiteProfiles Protein kinase domain profile. 539 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3083 829 MobiDBLite consensus disorder prediction 810 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3083 Ssu-Chr6 70339512 70342456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3083 30 812 Receptor kinase-like Gene Family AT3G51740 62.454 0.0 972
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu6g3083 PK_Tyr_Ser-Thr 3.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3083 - - gmx:100811174 1371.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3083 6 70339512 70342456 Ssu4g2436 4 60949339 60952836 ECH
Ssu6g3083 6 70339512 70342456 Ssu6g3083 6 70339512 70342456 ECH
Ssu9g1640 9 53168676 53171346 Ssu6g3083 6 70339512 70342456 PCT