Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3080 ATGGGTACTTATGATCAAGTTTCTCTTAAGCCCTTGGATTCTTCTAGAAAGAGGAAAAGCAGGAGCAGAGGGGATGGGTCTAGATCCGTGGCTGAGACACTGGCAAAGTGGAGGGAATTCAATGAGCATCTTTTAGCTGGCAAAGATGATGGTAGGCCAACTCGTAAGGCACCAGCTAAAGGTTCAAAGAAAGGGTGCATGAAAGGGAAGGGAGGACCCCAAAACTCTCAGTGTAACTACAGAGGTGTTAGGCAGAGGACATGGGGGAAATGGGTTGGCGAGATTAGGGAGCCCAATAGAGGAAGTAGGCTTTGGTTGGGTACCTTTTCTACTGCCCAAGAAGCTGCTCTTGCCTATGATGAAGCTGCTAGAGCCATGTATGGTCCATGTGCACGCCTCAACTTCCCCCACATCTCAGATTATGCTTCTGTCAAGGAATCGTTGAAGGAGTCTTCTTTGGCTGCATCGTCGTCTTGTTCTTCGGCCGCAACTGCAGCTTCTGACACAACCACTGCATCCAATCAATCAGAGGTTTGTGCAGCTGAGGATGTTAAGGAGAAGCCTCGACCTGTCGGTATGAATGACAAGGTTAATGCTTGTCATAAGGCTTATGAATCTGCCTCGCCGACTAGCAGAATGAAGCAAGAGCCGAAGGATGAGGCTGTCGATCTCTTGGGGGCTGGGGAAATTCAAGATGTCAGACCAGAAGGGACACCTGATGCTGGACAGGTTGCAGAGGATGTAAATAAAGATCAGATGGACCTTTCATGGGTTGatggatttgattttgatggTGATTACTTGAAGAGTTTTTCCATGGATGAGTTGTTTCAGGTGGATGAGCTTTTGGGGCATATAGATAACAACCCAATTGATGACTCTGGGTTGATGCAAGGTTTGGATTTTGGACAAATGGGTTTTCCAGGAGACAGTAATCCTCAGGTTGATGCGCCTTCAAGTTTTATTTATCAGTTGCAGAATCCAGATGCCAAGTTGTTGGGAAGTTTGCCCCATATGGAGCAGACACCATCAGGTGTTGATTATGGATTAGATTTCTTGAAAACAGTAGAGCCGGGGGACTATAATGGTGGAGGAGAAGAACCAAGATTTCTTAATTTGGATGATGATCTGAACAATGATTCAAAGGGAATGCAAGCAGGGAAGGATGATTAG 1173 0.4569 MGTYDQVSLKPLDSSRKRKSRSRGDGSRSVAETLAKWREFNEHLLAGKDDGRPTRKAPAKGSKKGCMKGKGGPQNSQCNYRGVRQRTWGKWVGEIREPNRGSRLWLGTFSTAQEAALAYDEAARAMYGPCARLNFPHISDYASVKESLKESSLAASSSCSSAATAASDTTTASNQSEVCAAEDVKEKPRPVGMNDKVNACHKAYESASPTSRMKQEPKDEAVDLLGAGEIQDVRPEGTPDAGQVAEDVNKDQMDLSWVDGFDFDGDYLKSFSMDELFQVDELLGHIDNNPIDDSGLMQGLDFGQMGFPGDSNPQVDAPSSFIYQLQNPDAKLLGSLPHMEQTPSGVDYGLDFLKTVEPGDYNGGGEEPRFLNLDDDLNNDSKGMQAGKDD 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3080 390 MobiDBLite consensus disorder prediction 1 30 - -
Ssu6g3080 390 Pfam AP2 domain 78 128 IPR001471 GO:0003700|GO:0006355
Ssu6g3080 390 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 360 - -
Ssu6g3080 390 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Ssu6g3080 390 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Ssu6g3080 390 MobiDBLite consensus disorder prediction 369 390 - -
Ssu6g3080 390 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Ssu6g3080 390 CDD AP2 78 137 IPR001471 GO:0003700|GO:0006355
Ssu6g3080 390 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 360 - -
Ssu6g3080 390 MobiDBLite consensus disorder prediction 11 26 - -
Ssu6g3080 390 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Ssu6g3080 390 Gene3D AP2/ERF domain 79 138 IPR036955 GO:0003700|GO:0006355
Ssu6g3080 390 MobiDBLite consensus disorder prediction 167 194 - -
Ssu6g3080 390 MobiDBLite consensus disorder prediction 358 390 - -
Ssu6g3080 390 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Ssu6g3080 390 MobiDBLite consensus disorder prediction 44 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3080 Ssu-Chr6 70298842 70300014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3080 16 374 AP2-EREBP Transcription Factor Family AT2G40340 41.644 1.19e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu6g3080 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3080 - K09286 gmx:100800134 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3080 6 70298842 70300014 Ssu6g3080 6 70298842 70300014 ECH