Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3078 ATGGCACACAGAAAAAGGCGTTTAGATCAACTGAAGCATCCATTCAGTTCTCACCCCTTTGAAGCAGTTGCCTTTGGCTCATGGCAAGCTGTGGAGTTCATAAAGATTGAGGCAGGAACTATGTCCATGCATTTTGTGGATAATCATCATATGGCTATGGAGAAAGGACCCTTGTCAGACATTCGGATAAGGTCAAGGAAAGCTACTTTATCAGATTGCTCCCGTTTTTTACGTCCTGGAATTGACGTGTGTGTGCTATCAGCCCCTCAACAATCTGATGATTCAGATGCAATTAGTCTCGACCCTGTTTGGGCTGATGCTAAGATAAGTTCTGTACAAAGAAGACCCCATGACTCTGAGTGCACGTGTCAGTTTTATGTCAGCTTCTATGTTCATCAAGGTTCACTTGGTGCGGAGATAAGAAGTCTTAGTAAAGAGATTAAAGTAGTTGGAATCAATCAAATATCCATCCTCCAAAAACTTGAACATATTCCTTGTGAAGATCAGCACTACCGGTGGGCTTCATCTGAGGACTGTTCTATTATATCACACACTAAATTGCTTCTGGGGAAAGTGTTATGTGATCTTTCATGGTTGGTTGTTGCCTCAGTTTTAAGGAAGGTTTCATTCTGCGTAAGATCTCTAGAAGACAAGCTAGTGTATCAAGTTTTGGGAAGGGATACGGTTAGCACTTCATTGAACAATGAGTCTCACATTAATGTTGTGAATTTCAGAACAGACGGTGGCATGTTAGTACCCATTGTTTCTCAAGTAGCTACACCTGAAACTAAGAGGGTTGATCATGTACAAGAATCCCATGAAGATGAAGTATCACCGTCTTATAATGTTGAGGGCTTACGGCGTTCCAAGCGCCGGAATGTACAACCTGAGCGTTACCTTGGTTGCGATAATGTTTCCGCGATTGATGTTGGTTCTTTTAGAAACAGACCACCAGTTAAGATAGACAATTggaaagatgatgatgatgatgatgaactGCATTTGCCATTAGCATGCCTGTTTGGTTTGCAGCAAAACTGTTTAGAAGAGGATCCTGACAATCGTCAAAAGGTCAAGAAGGCGAATACCTGCCGGGAGCTTGTGGTGTACAATAGAAAGAAGGCTAAATCCCGGAAGGTAAAGTCAGGAGATGATGATCAGAATGAACATCAAAATCAACTTGCTATTATTCCTCTTCCTGATCAAGATGATCCGGTAGCCGTTGAGCATTGTGATCTGAATGACAAGGTTACTAGAAGTTATGGTCATGAATCCTCTGAAATTTCTTCCAAATATTATCATCTATCTAGTACCCCTAAATCAAAGAGGAAcgaaattaaattgttaaattttgagCCTCATAATCATCCTTCAAAGTCAGATGATGCAGAAAAGAGTGATGATTTGTCATTGAGGTATCATTATAGTTATGGCACCCCTAAGTCACAGAGGAATAGTTTATGTGGTCTGGATGATATGGTGGATCTTGGAAACAAATGGGAAGGGATAAATTCCAATAAAGCAGTTCAAGGGAAAAAATATCGTACAACATATTTAAGAAGTAGAAATCACGGACAAGAAAGAAGTTACAATTATAAAGACAGAACCTTAAATGCAGCTGCTTACAAGGATTTGATAAATTCATacttaaagaatattaatacaAAACCAACCAAAGAAGAACCATCTATTGCTGAGCAGTGGAAGCAAAACAACACAACAAGCAGCACTGGGCAAAAGATGGAAACAGATATACTCGATGGAAAGGATGCGGAAGAAGCATCTGAAATGGATATGTTGTGGAGAGAACTGGAAGTGTCATTGGCATCAACTTATCTAGAAGACACACAGGATTCAAATACTGCCGTTTTAACTGAGACTCAGGAAGAGCCGAATGAAGGTTGTCCACATGATTACAGAATGAATGAAGAAATTGGAATTTACTGCTATAGATGTGGCTTTGTGAGAACTGAGATCAAATATGTTACACCACCCTTTATTCAACATTCAGTGTATCACCAAGAGGAGAAGCAGAGTGCTGAAGAAGATTCAAGGACCAAGGCTGATGAGGATGAGGACTTCGATCTTTTCCCGAATCTTGCTTCTCCTGAGGAACCTGTGTCTGAAGAAAATGATAACGTTTGGGCATTAATTCCCGAAATTAGAACAAAGTTGCATGCCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAACATTGCAGGGTCCATGGAACCAGGATGTATGGAAGCAGCATCCAAAAGAAGAGGTGGCTGTGTGATATCTCATTCTCCTGGAGCTGGAAAAACTTTTCTTATCATTGCTTTTCTTGTAAGCTACTTGAAGCTATTCCCAGGGAAGAGGCCTCTTGTCCTTGCTCCAAAAACAACACTCTATACTTGGTATAAAGAATTTATCAAGTGGGACATTCCTATACCAGTATATCTGATTCATGGTCGTAGAACCTACAGGGTATTCAAGCAGAAATCAATGATTGTTATTCCTGGAGTTCCCAAGCCAACTGACGATGTCAAACATGTTTTGGATTGCCTTGAGAAGATTCAAAAATGGCATTCACACCCGAGTGTTCTGATCATGGGTTATACTTCATTTTTAGCATTGATGCGAGAGGACTCTAAGTTCGCACACAGAAAATACATGGCTAAAGTATTGAGGGAAAGCCCTGGGATCATGGTACTGGATGAAGGGCACAATCCTAGAAGCACTAAATCTAGGTTGAGAAAGGTTTTGATGAAAGTGCAGACAGAATTGAGAATACTGCTTTCAGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAACACCTTGTGCTTGGCAAgaccaaagtttattaatgaAGTACTGAAAGCATTAGACCCAAAATATAGGAGGAAAGGGAAAGTGGCAAAGAAGGCGCGTAATTTATTAGAGTCACGGGCCAGAAAATTCTTCTTGGACAAAATTGCTAAGAAAATTGACTCAAATAATGGTAGGGAGAGGCGGCAGGGTTTAAAGATGTTGAGAAATGTGACAAATGGTTTTATAGATGTTTATGAAGGTGGGAGTTCTGATGGTCTACCTGGTTTGCAAATTTATACATTGCTAATGAATTCAACAGATACACAGCATGAGATTTTGCAGAAACTGCACAAGAAAATGGCCAAGTGCAATGGATACCCTCTGGAGTTAGAGCTTTTGATTACTCTTGGTTCAATACATCCTTGGTTGGTTAAAACAGCTGTATGTGCTGAAAAGTTTTTCACTTCGGAGCAATTGATGGAGCTAGAGAAATGcaagtttgatttaaaaataggcTCCAAAGTAAGATTTGTTTTGAGCCTCATCTATCGCGTTGTCAAGAAGGAGAAGGTTCTTCTATTTTGCCATAATATTGCCCCTGTCAAATTATTTACAGAATATTTTGAGAAGTACTTTGGATGGCAAAAAGGTAGGGAAGTGTTGGTACTAACTGGGGAACTAGAGCTCTTTGAAAGAGGGAGAGTAATGGATAAGTTTGAGGAGCCTGGTGGAGTGTCAAAGATACTCCTTGCTTCAATTACAGCTTGTGCTGAAGGCATTAGTTTGACGGCTGCTTCTCGTGTGATCATGTTGGACTCAGAGTGGAACCCTTCCAAAACAAAGCAGGCTATTGCCCGTGCCTTTCGTCCTGGTCAGCAGAAAATGGTGTATGTGTATCAGCTCTTGGTGACAGGTTCATTGGAGGAAGATAAGTACCGAAGAACCACTTGGAAAGAGTGGGTGTCAAGCATGATCTTTAGTGAGGCCTTTGTGGAGGACCCTTCTCAGTGGCAAGCTGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGGAGGACCGGTCTAAATCATTCCATATGatcatgaaaaatgaaaaagcttcCACCAACAGATAA 3921 0.3945 MAHRKRRLDQLKHPFSSHPFEAVAFGSWQAVEFIKIEAGTMSMHFVDNHHMAMEKGPLSDIRIRSRKATLSDCSRFLRPGIDVCVLSAPQQSDDSDAISLDPVWADAKISSVQRRPHDSECTCQFYVSFYVHQGSLGAEIRSLSKEIKVVGINQISILQKLEHIPCEDQHYRWASSEDCSIISHTKLLLGKVLCDLSWLVVASVLRKVSFCVRSLEDKLVYQVLGRDTVSTSLNNESHINVVNFRTDGGMLVPIVSQVATPETKRVDHVQESHEDEVSPSYNVEGLRRSKRRNVQPERYLGCDNVSAIDVGSFRNRPPVKIDNWKDDDDDDELHLPLACLFGLQQNCLEEDPDNRQKVKKANTCRELVVYNRKKAKSRKVKSGDDDQNEHQNQLAIIPLPDQDDPVAVEHCDLNDKVTRSYGHESSEISSKYYHLSSTPKSKRNEIKLLNFEPHNHPSKSDDAEKSDDLSLRYHYSYGTPKSQRNSLCGLDDMVDLGNKWEGINSNKAVQGKKYRTTYLRSRNHGQERSYNYKDRTLNAAAYKDLINSYLKNINTKPTKEEPSIAEQWKQNNTTSSTGQKMETDILDGKDAEEASEMDMLWRELEVSLASTYLEDTQDSNTAVLTETQEEPNEGCPHDYRMNEEIGIYCYRCGFVRTEIKYVTPPFIQHSVYHQEEKQSAEEDSRTKADEDEDFDLFPNLASPEEPVSEENDNVWALIPEIRTKLHAHQKKAFEFLWQNIAGSMEPGCMEAASKRRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSMIVIPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLALMREDSKFAHRKYMAKVLRESPGIMVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFINEVLKALDPKYRRKGKVAKKARNLLESRARKFFLDKIAKKIDSNNGRERRQGLKMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNSTDTQHEILQKLHKKMAKCNGYPLELELLITLGSIHPWLVKTAVCAEKFFTSEQLMELEKCKFDLKIGSKVRFVLSLIYRVVKKEKVLLFCHNIAPVKLFTEYFEKYFGWQKGREVLVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVEEDRSKSFHMIMKNEKASTNR 1306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3078 1306 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 20 1304 - -
Ssu6g3078 1306 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 750 950 IPR014001 -
Ssu6g3078 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1025 1289 IPR027417 -
Ssu6g3078 1306 SMART ultradead3 721 955 IPR014001 -
Ssu6g3078 1306 CDD SF2_C_SNF 1100 1236 - -
Ssu6g3078 1306 Pfam SNF2-related domain 750 993 IPR000330 GO:0005524|GO:0140658
Ssu6g3078 1306 CDD DEXHc_ATRX-like 725 955 - -
Ssu6g3078 1306 Gene3D - 701 992 IPR038718 -
Ssu6g3078 1306 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 20 1304 IPR044567 GO:0080188
Ssu6g3078 1306 SMART helicmild6 1136 1225 IPR001650 -
Ssu6g3078 1306 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1112 1272 IPR001650 -
Ssu6g3078 1306 Pfam Helicase conserved C-terminal domain 1108 1224 IPR001650 -
Ssu6g3078 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 706 963 IPR027417 -
Ssu6g3078 1306 Gene3D - 1029 1306 IPR027417 -
Ssu6g3078 1306 MobiDBLite consensus disorder prediction 557 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3078 Ssu-Chr6 70265517 70270984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3078 1149 1243 RAD5 or RAD16-like Gene Family AT5G43530 38.947 5.69e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu6g3078 SNF2_N 4.5e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3078 K10875 - gmx:100811703 2300.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3078 6 70265517 70270984 Ssu6g3078 6 70265517 70270984 ECH
Ssu9g1636 9 53081144 53086633 Ssu6g3078 6 70265517 70270984 PCT