Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3074 atgggtggAAATTCCCCTTGTGCCTCATGCAAACTGCTGAGACGCCGGTGCACAAAAGATTGCACCTTCGCTCCTTATTTTCCTTCTGATGAACCCCATAAGTTCGCCATAGTTCACAAGGTTTTCGGTGCTAGCAATGTTAGCAAAATGTTGCAGGAACTTCCAGTTCACCAGAGAGCAGATGCAGTGAGTAGTCTAGTGTATGAGGCAAATGCAAGAGTGAGGGATCCTGTGTATGGTTGTGTTGGAGCAATATCCTACTTGCAAAATCAAGTTTCTGAGCTTCAAATGCAACTTGCAGTTGCTCAAGCAGAGATACTCTGTATCCAGATGGAACATGAGCCAGTGATGCCAAACTCAGAAATTGATCTAGACCAGAAGTCTTACTTTCTCCAAAATGAACTCTCCCAATTTCTTAGTTTTGACACTTCTAGCAATGTAATTCACCGTTCCCCCGAGCAATTTTGCCCATGA 474 0.4304 MGGNSPCASCKLLRRRCTKDCTFAPYFPSDEPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMEHEPVMPNSEIDLDQKSYFLQNELSQFLSFDTSSNVIHRSPEQFCP 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3074 157 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Ssu6g3074 157 Coils Coil 85 105 - -
Ssu6g3074 157 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Ssu6g3074 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 149 - -
Ssu6g3074 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3074 Ssu-Chr6 70197111 70197956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3074 3 131 AS2 family AT2G30130 81.203 1.57e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu6g3074 LOB 7.2e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3074 - - gmx:100812780 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3074 6 70197111 70197956 Ssu6g3074 6 70197111 70197956 ECH
Ssu9g1628 9 52963192 52963930 Ssu6g3074 6 70197111 70197956 PCT