Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3064 ATGAGCAAGAACAGGAAACTCGGTCGGTGCAGGGATCTTTATATGGCTTTGCGCTTTGTGGCggttttcttcttgtttcaGAACTTGGATTTGTGCTGTTCTTTAAATGAAGAAGGTAATGCTCTTTTGAAGTTGAGGGAGAGAATAGTGAGTGACCCTTTTGGTGCTTTGTCAAATTGGATTGATGATGAAGCATCTGTTGACCCTTGTAATTGGTTCGGAGTTGAGTGCTCAGATGGAAGAGTTGTGGCCTTGAATTTGAAGGATCTCTGCCTTGGAGGAACTCTGGCGCCTGAGATTGTGAAGCTTGTTCGCATAAAGTCTATTATTTTGCGGAACAACTCTTTCTATGGGACCATGCCTGAAGGATTTGTGGAGTTAAAAGAATTGGAGGTTTTGGATTTGGGATACAACAACTTCAGTGGACATCTACCAGCTGATCTTGGGAGTAATATCTCACTAGCAATCCTTTTGCTGGATAACAATGAATTTCTTGTTGGTTTCTCTCCCGAAATCAATGAGCTGAGGATGCTTTCTGAATGTCAAGTAGATGAAAATCAGCTAACTAATGCTGCTAATATGCCAGCTTGTACAGAAAGAGCCATCACATGGCATATTGGTCAAGGTAAAGGCACTCGTGGCCTACTAGAAATTCGTAAAAAACGACATATTCGTGATCATGAAGACCCTCTTAATCGTGCGGATAGTCCATTTCTCGAGAGCCCTCCTCCTTCTGCTTCCCCATCAGCCCCAGCAAAACCACCAGTGCCAAAGCCAGCTCCTCCTCCCTTGTCTGCACCAGGTTCTGGAGCACTATCTAAAACTAAAAGTACCTCATCAGAGCTTCATCGAGTTCCTATTTTGGCTGGAGTTATAGGTGGTGttgtatttcttcttatttcaaGCATTGGCATATATCTTTGTAAAACGAAGGTAGCTAATGTCAGACCTTGGTCTACGGGACTAAGTGGACAGCTTCAGAAGGCATTTGTAACTGGGGCACAAAAGCTAAAGAGATCAGACCTTGAAGCAGCATGTGAAGATTTTAGTAATGTAATTGGTACTTCACCCATTGGTACACTGTACAAAGGAACTTTGTCTAGTGGCGTTGAAATAGCTGTAGCTTCTGTTCCGGTGACATCATCCAAGAATTGGTCGAAGACTTTAGAAGCTCAATTTAGAAAGAAGCTAGATACATTATCCAAAGTTAACCACAAGAATTTTGTTAATCTTATTGGATACTGCGAAGAAGAGGTTCCTTTCACCAGAATGTTGGTTTTTGAATATGCTCCAAACGGAACACTATTTGAGCATTTACACATAAAAGAGGCTGAGCACTTGGATTGGGGAACAAGAGTTAGAGTTGCAATGGGTATGGCTTATTGCCTGCAGCATATGCACCAGTTGGACCCTCCTATGGCCCTTATCAAGCTGAATTCTTCAGCTGTTTACCTGACTGATGACTATGCTGCCAAACTCTCAGATTTGAGTTTCTCAAACGACATAGCCTCAGCTGAGGCCAAAGCTATTGACATGCCAATAGCAACTCCAGAAAGTAATGTTTATAGCTTTGGTGTTTTACTATTTGAAATGGTTACTGGTCGTCTACCCTATTCAGTGGAACAAAGGGACTCACTTGAAAACTGGGCATCACACTATTTACAAGGGGACCAGCCCCTCAAAGAAATGGTGGATCCAATTCTAGTATCTTACCAAGAGGATCAGTTGGAACAAGTTGCTGCGTTGATTAAATCTTGTGTCCACCCTGATCCAGAGCAGAGACCAACAATGAAAGATGTCAGTgagagattgaaagagataacaaaaataacaccTGAAGCAGCAGTTCCAAAACTTTCTCCACTTTGGTGGGCAGAGCTTGAGATTGCTTCTGCAGAAGCACGTTGA 1908 0.414 MSKNRKLGRCRDLYMALRFVAVFFLFQNLDLCCSLNEEGNALLKLRERIVSDPFGALSNWIDDEASVDPCNWFGVECSDGRVVALNLKDLCLGGTLAPEIVKLVRIKSIILRNNSFYGTMPEGFVELKELEVLDLGYNNFSGHLPADLGSNISLAILLLDNNEFLVGFSPEINELRMLSECQVDENQLTNAANMPACTERAITWHIGQGKGTRGLLEIRKKRHIRDHEDPLNRADSPFLESPPPSASPSAPAKPPVPKPAPPPLSAPGSGALSKTKSTSSELHRVPILAGVIGGVVFLLISSIGIYLCKTKVANVRPWSTGLSGQLQKAFVTGAQKLKRSDLEAACEDFSNVIGTSPIGTLYKGTLSSGVEIAVASVPVTSSKNWSKTLEAQFRKKLDTLSKVNHKNFVNLIGYCEEEVPFTRMLVFEYAPNGTLFEHLHIKEAEHLDWGTRVRVAMGMAYCLQHMHQLDPPMALIKLNSSAVYLTDDYAAKLSDLSFSNDIASAEAKAIDMPIATPESNVYSFGVLLFEMVTGRLPYSVEQRDSLENWASHYLQGDQPLKEMVDPILVSYQEDQLEQVAALIKSCVHPDPEQRPTMKDVSERLKEITKITPEAAVPKLSPLWWAELEIASAEAR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3064 635 Pfam Protein tyrosine and serine/threonine kinase 350 604 IPR001245 GO:0004672|GO:0006468
Ssu6g3064 635 Pfam Leucine rich repeat N-terminal domain 36 78 IPR013210 -
Ssu6g3064 635 Gene3D Phosphorylase Kinase; domain 1 319 429 - -
Ssu6g3064 635 MobiDBLite consensus disorder prediction 241 266 - -
Ssu6g3064 635 Gene3D Transferase(Phosphotransferase) domain 1 430 616 - -
Ssu6g3064 635 PANTHER LRR RECEPTOR-LIKE KINASE 1 632 - -
Ssu6g3064 635 ProSiteProfiles Protein kinase domain profile. 347 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3064 635 SUPERFAMILY Protein kinase-like (PK-like) 333 604 IPR011009 -
Ssu6g3064 635 Gene3D Ribonuclease Inhibitor 33 206 IPR032675 -
Ssu6g3064 635 SUPERFAMILY L domain-like 41 191 - -
Ssu6g3064 635 MobiDBLite consensus disorder prediction 224 277 - -
Ssu6g3064 635 PANTHER PROTEIN MALE DISCOVERER 2 1 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3064 Ssu-Chr6 70074803 70078740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3064 13 605 Receptor kinase-like Gene Family AT5G16000 25.472 8.45e-45 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Ssu6g3064 PK_Tyr_Ser-Thr 5e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3064 - - gmx:100792450 1034.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3064 6 70074803 70078740 Ssu6g3064 6 70074803 70078740 ECH
Ssu9g1621 9 52844751 52848789 Ssu6g3064 6 70074803 70078740 PCT