Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3061 ATGAATGATGTTCTATTTGCAATGATGGTCTCCCCAGGGTTGTTACCATCTGGGTCTTTGCTAGATTCTTTGATTCACGTGTCCAGTGAAGTTGGCTCAATGGAGAGGTTTCCCTTGGTACACATGAGGAACGTTTCATCCATGATAAGGAGGATCAagcttctttcttctttgtttgaAGAGATTCAAGAAACGGATACACCACTTCCTCCTTCTTCGATCCTGTGTCTCACAGAACTCTTCTCTGTGATTAGAAGAGTGAAGGTTTTGATCCAAGACTGCAAGGATGGAAGCTCTCTTTGGAGTCTCATACAATTAGAGTTCATTTCCAACCAATTTTATGTGCTTGTTAAGGAAATGGGAAGAGCCCTTGATATACTTCCTTTGAGTTTGCTTGATGTAACATCAGATGTACGTGAACAAGTGGAGCTTCTTCACAAGCAAGCAAAGAGGGCTGAGTTACTCATTGATACTAGAGAGCTTCAACGAAGAGAACAGCTTATGCAAGTAATGGCCAACAACAGTTTACAAAACAAGAAGAACAAGGGGTTCATTGACTTTGGCAAAGTGGAAGAGATATTAAGCAGCATTGGTTTGAGAACCCCATCAGATTATGATGGAGAAATATCCAAGTTAGAGGCTGAAGCTCAGAATCAGGCTGGCACAGGAGGACTAATCGTTGTCTCCATTATAAACAATCTCATATCTCTGGTCTCTTACTCCAAATCCATGACATTCAGAGATGGAGAGAGTGATAGAAATGAAGAAGATTGTAAGCCACTATCTgcatttttatacaataaagtCCATGATAGTTCTTCATCCTCTCAGTCCATGACACCTAATATTCCTGATGAATTTCGTTGCCCAATTTCACTTGATTTAATGAGGGATCCCGTGATTGTGTCATCAGGGCACACTTACGATAGAACTTCAATTGCACAATGGATAAACTCTGGCCATCACACATGCCCCAAAAGTGGGCAAAGGCTAATTCACACTGCTCTAATACCCAACTATGCATTGAAGAGCCTTGTTCAGCAATGGTGCTATGACAACAATGTTCCAGTGAATGAGCCTGCGACCGAggaaaccaacaacaacaacaacaggaaGAAGAACTCGAACGAGGAAGCTATTGACCATATTTCTGCAAACAAAGCAGCTGCAGATGCTGTCAAAATGACAGCAGAATTTCTTGTTGGAAAATTGGCAACTGGTTCTGCCGATATCCAAAGGCAAGCTGCATATGAACTTCGGTTACTTGCAAAAACCGGCATGAATACCCGAAGGATCATAGCCGAGGTAGGGGCCATTCCCTTTCTTGTAACACTTCTAGGATCTCAAGATTCAAGAATCCAAGAGCATGCCGTGACAGCCTTGTTCAACCTCTCGATATTCGACAACAACAAGATTTTGATCATGGCAGCAGGAGCAGTTGATAGCATAGTAGAAGTACTTGAATCAGGGAAGACCATGGAGGCAAGGGAGAATGCAGCAGCATTAATATTTAGCTTGTCTATGGTAGATGAGTGCAAAGTGCAAATTGGAGGGAGACCAAGGGCAATACCTGCCTTAGTTGGACTCTTGAAAGAAGGCACTCCAATTGGTAAAAGAGATGCTGCAACTGCACTGTTCAATCTTGCAGTTTACAATCCTAACAAGGCAAGTGTGGTCAAAGCTGGGGCAGTTCCTGTGCTGGTTGAGTTGCTGATGGATGACAAGGCCGGCATAACAGATGATGCACTTGCTGTGCTTGCTTTGCTCCTTGGTTGCTCTGAGGGGCTAGAAGAGATAAGGAATAGTAGAGCATTGGTGCCACTTCTTATTGATCTTCTGAGATTTGGGTCAGTGAAAGGGAAGGAAAATTCAATAACCCTTTTACTAGGACTGTGCAAAGAAGAAGGGGAAGTGGTGGCAAGGAGGCTCTTGGCAAATCCAAGGAGCATTCCTTCTCTTCAAAGCTTGGCTGCTGATGGGTCTTTGAGAGCTAGGAGAAAGGCAGATGCACTGCTTCGGTTCCTCAATAGGTGCTGCTCTCAGCCTCATCATTCTGTTTGA 2061 0.4236 MNDVLFAMMVSPGLLPSGSLLDSLIHVSSEVGSMERFPLVHMRNVSSMIRRIKLLSSLFEEIQETDTPLPPSSILCLTELFSVIRRVKVLIQDCKDGSSLWSLIQLEFISNQFYVLVKEMGRALDILPLSLLDVTSDVREQVELLHKQAKRAELLIDTRELQRREQLMQVMANNSLQNKKNKGFIDFGKVEEILSSIGLRTPSDYDGEISKLEAEAQNQAGTGGLIVVSIINNLISLVSYSKSMTFRDGESDRNEEDCKPLSAFLYNKVHDSSSSSQSMTPNIPDEFRCPISLDLMRDPVIVSSGHTYDRTSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCYDNNVPVNEPATEETNNNNNRKKNSNEEAIDHISANKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMNTRRIIAEVGAIPFLVTLLGSQDSRIQEHAVTALFNLSIFDNNKILIMAAGAVDSIVEVLESGKTMEARENAAALIFSLSMVDECKVQIGGRPRAIPALVGLLKEGTPIGKRDAATALFNLAVYNPNKASVVKAGAVPVLVELLMDDKAGITDDALAVLALLLGCSEGLEEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLAADGSLRARRKADALLRFLNRCCSQPHHSV 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3061 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515
Ssu6g3061 686 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 357 IPR013083 -
Ssu6g3061 686 Gene3D - 515 678 IPR011989 -
Ssu6g3061 686 Gene3D - 364 514 IPR011989 -
Ssu6g3061 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 521 563 IPR000225 GO:0005515
Ssu6g3061 686 PANTHER U BOX DOMAIN-CONTAINING 17 684 - -
Ssu6g3061 686 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 17 684 - -
Ssu6g3061 686 CDD RING-Ubox_PUB 287 329 IPR045210 -
Ssu6g3061 686 Pfam U-box domain 283 353 IPR003613 GO:0004842|GO:0016567
Ssu6g3061 686 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Ssu6g3061 686 SUPERFAMILY ARM repeat 397 675 IPR016024 -
Ssu6g3061 686 Pfam Armadillo/beta-catenin-like repeat 552 587 IPR000225 GO:0005515
Ssu6g3061 686 Pfam Armadillo/beta-catenin-like repeat 431 465 IPR000225 GO:0005515
Ssu6g3061 686 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Ssu6g3061 686 SMART arm_5 592 633 IPR000225 GO:0005515
Ssu6g3061 686 SMART arm_5 512 550 IPR000225 GO:0005515
Ssu6g3061 686 SMART arm_5 426 466 IPR000225 GO:0005515
Ssu6g3061 686 SMART arm_5 467 508 IPR000225 GO:0005515
Ssu6g3061 686 SMART arm_5 385 424 IPR000225 GO:0005515
Ssu6g3061 686 SMART arm_5 551 591 IPR000225 GO:0005515
Ssu6g3061 686 SUPERFAMILY RING/U-box 270 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3061 Ssu-Chr6 70033791 70035851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3061 18 681 U-box Gene Family AT3G46510 39.104 1.38e-130 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3061 - - gmx:100793498 1163.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3061 6 70033791 70035851 Ssu6g3061 6 70033791 70035851 ECH