Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3060 ATGGAGAGAACCATATATACTTGTAAGTGCAAACAAAATAGGAAAGCGTATTTGAGAGAATTGAAAGCCATGAAGGGTTATGAACCACGTTCAAGCTCTTCTTGTGCAGCCTGCAAGTTTTTGAAAAGAAGATGCATACCCAATTGCATATTTGCACCTTACTTTCGCTCCGATGAGTGCAAGAAATTCGCCAAGGTGCACAAGGTGTTTGGAGCCAGCAATGTGAGCAAGATCCTCATTGAAGTGCCGGAGGAGCAGAGAGAGGACACGGTGAATTCCCTTGCTTACGAGGCAGAAGCGAGGCTTAGGGACCCGGTTTATGGATGCATTGGTGCCATAGCTCTGTTGCAGAGGAAGATGGTGGAGCTTCAACATGACCTTGCCATTGCTAAGGACCGTCTTGCTCGCTATGCTGCTGCTGCTACTACCACCCCTTCCACTACTGATACCTTGAATGCCCATGTTAGTTTGCCACCTTTCCCTGAATTTTTCACTTGCGGTGATTTCAATGACAACTTCTGCCACACCTCTTCGTCTCAATCATTGAGCAGACATGAAACGGTGGAtgatttcaatattcaaatcccatatatattttga 600 0.4417 MERTIYTCKCKQNRKAYLRELKAMKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARYAAAATTTPSTTDTLNAHVSLPPFPEFFTCGDFNDNFCHTSSSQSLSRHETVDDFNIQIPYIF 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3060 199 Pfam Lateral organ boundaries (LOB) domain 34 131 IPR004883 -
Ssu6g3060 199 ProSiteProfiles LOB domain profile. 33 134 IPR004883 -
Ssu6g3060 199 Coils Coil 113 140 - -
Ssu6g3060 199 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 24 193 - -
Ssu6g3060 199 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3060 Ssu-Chr6 70018751 70019350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3060 24 164 AS2 family AT3G11090 65.972 5.43e-65 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu6g3060 LOB 8.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3060 - - gmx:100777635 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3060 6 70018751 70019350 Ssu6g3060 6 70018751 70019350 ECH