Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3059 ATGGGAAGTTCCGTGCGTGTAAAAGAAGCATCGGTGGTTACACCTTCCGAGCCCACCCCATCGAGTGTACTCGCTCTATCAGCTCTCGATTCGCAACTCTTCCTTCGCTTCACCATAGAGTACCTCTTGGTCTACCAGCCTTGCCCTGGCGTGGACCAGGGCTCCACCACGGCCCGTCTCAAAGCAGCATTAGCCCGAGCACTGGTTCCCTATTACCCCTTCGCAGGCCGGGTCAGGCCCAGGCCCGATAGGCCAGGCCTCGAGGTGGTGTGCGCAGCCCAAGGCGCGTTGTTCATAGAAGCCTTCGCTGACCGTTACAACGCCAACGACTTCGAGAAAGCTCCGAAAACAGTTACGCACTGGAGGACGCTGTTATCGATCCACGAGGCAGACGTGCTCAAGGGGTCGCCGCCGCTGGTGGTGCAGCTGACGTGGCTCGGCGACGGAGCCGCCGCGATCGGTGTCGGAATCAACCACTGCATCTGCGACGGAATCGGGAGCGCGGAGTTTCTAAACTATTTCGCGGAGTTGGCTAACGAAAAACGCGAGTTGGGCAGCAGGCCCAAACCCAAACCAATTTGGGAGCGTCACCTGCTGAACCCGCCGCGTGGGAAGCAGACGCGGGTCGACCCGGCGAGTCACCCCGAGTTCAACCGAGTCCCTGACTTGTGCGGCTTCGTGAACAAGGTCTCGACCGGGCTCAAGCCGACCTCGGTTACCTTCGACAAGAGGAGGCTCAAGGAGCTGAAGAGACTCGCGCGGTGCACGAGTCAGCCCGGCGAGTCGTTGCGGTACACGTCGTTCGAGGTGCTCGCGGCGCACGTGTGGAGGAGCTGGGCGAGGGCGCTGAGGTTTCCGCCGAACCAGAAGCTGAAGCTGGTGTTTAGTATTAACGTGCGGAACCGCGTGAAGCCGGGTTTGCCGGAGGGGTATTACGGGAACGCGTTTGTGTTGGGGTGCGCGGAGGCGAGCGCGAAGGAGTTGGAGGATAGGGGGATCGGGTTCGGGTCGGGTTTGGTGAGGAGTGCGAAGGAGAGGGTGGGGAACGAGCACGTGAGGGGCGTGATGGAGTGGGTGTGGGAAAGGAGAGCGTGTCCTGACCCGGTGGGGGTGTTGATAGTGTCGCAGTGGTCGAGGCTGGGGTTGGAGAACATTGACGTGGGTTTGGGAAAGCCTGTTCACGTGGGACCCGTGTGCTGCGATAGGTACTGTTTGTTTTTGCCGGTGAGGGATGAGTGTGTGAGTGTCAAGGTCATGGTGGCTGTCCCCACTCCTGCCGTTGACAATTACGAGCTTTTGATGCGTGCGTCGCACCTGTGA 1320 0.6045 MGSSVRVKEASVVTPSEPTPSSVLALSALDSQLFLRFTIEYLLVYQPCPGVDQGSTTARLKAALARALVPYYPFAGRVRPRPDRPGLEVVCAAQGALFIEAFADRYNANDFEKAPKTVTHWRTLLSIHEADVLKGSPPLVVQLTWLGDGAAAIGVGINHCICDGIGSAEFLNYFAELANEKRELGSRPKPKPIWERHLLNPPRGKQTRVDPASHPEFNRVPDLCGFVNKVSTGLKPTSVTFDKRRLKELKRLARCTSQPGESLRYTSFEVLAAHVWRSWARALRFPPNQKLKLVFSINVRNRVKPGLPEGYYGNAFVLGCAEASAKELEDRGIGFGSGLVRSAKERVGNEHVRGVMEWVWERRACPDPVGVLIVSQWSRLGLENIDVGLGKPVHVGPVCCDRYCLFLPVRDECVSVKVMVAVPTPAVDNYELLMRASHL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3059 439 MobiDBLite consensus disorder prediction 192 211 - -
Ssu6g3059 439 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 6 433 - -
Ssu6g3059 439 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 6 433 - -
Ssu6g3059 439 Pfam Transferase family 4 425 - -
Ssu6g3059 439 Gene3D - 2 218 IPR023213 -
Ssu6g3059 439 Gene3D - 229 433 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3059 Ssu-Chr6 69993472 69994791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3059 5 434 Monolignol Biosynthesis Gene Families AT5G48930 26.339 2.67e-45 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3059 - - gmx:100817048 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3059 6 69993472 69994791 Ssu6g3059 6 69993472 69994791 ECH
Ssu9g1616 9 52795775 52797070 Ssu6g3059 6 69993472 69994791 PCT