Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3058 ATGGCCTCTCTCCAGCCCCAACCCCGAGAAACCAAACCCACCGCCACCACCGCCACAGCCTCCACTCCCTGCGAAACATCTAACAGcaacagcagcagcagcaacaacaacagcaacaaaagCAGTCGCAAGTGCAAAGGCAAAGGTGGCCCCGACAACAACAAGTTTAGGTACCGCGGCGTGAGACAACGAAGCTGGGGCAAGTGGGTCGCCGAGATCCGCGAGCCGCGGAAGCGGACGCGCAAGTGGCTCGGAACCTTCGCCACCGCCGAGGACGCCGCCAGAGCCTACGACCGCGCCGCCGTCATCCTCTACGGTTCCCGGGCGCAGCTTAACCTTCAACCCTCCGATTCCTCTTCTCACTCCTCCTCCTCTCGTGGcgcttcctcttcctcttccactCAAACCCTTCGACCCTTGCTTCCTCGTCCCTCCGGCTTCGGTTTCACGCTCTCTTCCAATTTTCCGTTCAACGCCGCCGCCGCCGTGCCCTACCCTTGCGGCGGCGCTTATAACAATAGTCACAATTACACTTATGCCCCACCCGTGTTGTGCCCTATTGATATCgataatagcaataataataataataataatatagtgcAACTTCATCAACATCACTATCATCGTGCGGAGGAAGTGGTGCAAGTGCCACAACAGCATCAACACTCGGAATCTGATGTGAGTTTAGGTGGGAATATTGTTGATAGTTCTATTAGTAGATCAACCTCGTACCAAAGGCATGGTTATCAGGATAATAATCATGTGCAAGTGCAACATGGTGTTTTGTCGAGTCAACAGCAACATCAGAGTAGCGTGGTGGATGGAGTGAATTCCGTTGTGGGTTCGGTTGGGTTAAGCTTGTCTTCTTCACAGGTAAATATGGATGATACATCGGGATCCGGATCTCTCGTTGGTGGGGACAGTGGGTCTTGGATCTCCCTCTATGTGGTCGTTGACGAATGA 966 0.4928 MASLQPQPRETKPTATTATASTPCETSNSNSSSSNNNSNKSSRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAVILYGSRAQLNLQPSDSSSHSSSSRGASSSSSTQTLRPLLPRPSGFGFTLSSNFPFNAAAAVPYPCGGAYNNSHNYTYAPPVLCPIDIDNSNNNNNNNIVQLHQHHYHRAEEVVQVPQQHQHSESDVSLGGNIVDSSISRSTSYQRHGYQDNNHVQVQHGVLSSQQQHQSSVVDGVNSVVGSVGLSLSSSQVNMDDTSGSGSLVGGDSGSWISLYVVVDE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3058 321 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Ssu6g3058 321 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Ssu6g3058 321 SUPERFAMILY DNA-binding domain 57 114 IPR016177 GO:0003677
Ssu6g3058 321 MobiDBLite consensus disorder prediction 45 59 - -
Ssu6g3058 321 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Ssu6g3058 321 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABI4 9 292 - -
Ssu6g3058 321 MobiDBLite consensus disorder prediction 1 60 - -
Ssu6g3058 321 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Ssu6g3058 321 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 292 - -
Ssu6g3058 321 MobiDBLite consensus disorder prediction 112 139 - -
Ssu6g3058 321 Pfam AP2 domain 57 101 IPR001471 GO:0003700|GO:0006355
Ssu6g3058 321 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
Ssu6g3058 321 CDD AP2 57 114 IPR001471 GO:0003700|GO:0006355
Ssu6g3058 321 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3058 Ssu-Chr6 69967618 69968583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3058 41 186 AP2-EREBP Transcription Factor Family AT2G40220 64.706 2.93e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu6g3058 AP2 3.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3058 K09286 - gmx:100779779 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3058 6 69967618 69968583 Ssu6g3058 6 69967618 69968583 ECH