Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3057 ATGTCGGCGAACCGGGACTCCGAGGTATTCAATTGGCACTACGACACGGAGCTCGACGGCCAAACCCTAGAAATCCGCGGCCGCAAGCTCTTCTTCATCATCGTCCTCTTCTCCATCATCTTCCTCTTCGTCGCGCTCTTCGTCTTCGCGCGCCGGATCTGCCGCCAGCACGGCGTCCTCCTCCCCTCCGTCCAGCCGCGCCAcgcgccgccgccgccgccgcagCAAGAggagcagcagcagcagcagggCCTCGACGCCGACGCGATCAAGAGGCTGCCGATCATCCTGCACCAGGCGCCGCCGGGGCCGAACCGCGCGGCGGCGGAGACCGAGTGCTGCATCTGCCTCGGCGCCTTCGTCGACGGCGAGAAGCTGAAGGTTTTGCCCGGGTGCGACCATAGCTTCCATTGCGAGTGCGTCGACAAGTGGCTCGCGAATCACTCTAATTGCCCTCTGTGTAGAGCTTCTCTCAAGCTCGATTCTTCGTTCCCCAGGATTTTGATCGAAGCACCACCCCTTAGAACTAGTCTTCTGATCTGa 543 0.5599 MSANRDSEVFNWHYDTELDGQTLEIRGRKLFFIIVLFSIIFLFVALFVFARRICRQHGVLLPSVQPRHAPPPPPQQEEQQQQQGLDADAIKRLPIILHQAPPGPNRAAAETECCICLGAFVDGEKLKVLPGCDHSFHCECVDKWLANHSNCPLCRASLKLDSSFPRILIEAPPLRTSLLI 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3057 180 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Ssu6g3057 180 MobiDBLite consensus disorder prediction 65 84 - -
Ssu6g3057 180 Pfam Ring finger domain 112 155 IPR001841 -
Ssu6g3057 180 PANTHER RING-H2 FINGER PROTEIN ATL66 3 169 - -
Ssu6g3057 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 160 IPR013083 -
Ssu6g3057 180 SUPERFAMILY RING/U-box 112 161 - -
Ssu6g3057 180 SMART ring_2 113 154 IPR001841 -
Ssu6g3057 180 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 169 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3057 Ssu-Chr6 69949938 69950480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3057 7 163 C3H Transcription Factor Family AT3G11110 38.217 1.17e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3057 - - gmx:100794554 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1614 9 52722944 52723555 Ssu6g3057 6 69949938 69950480 PCT