Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3055 ATGATAGGCGGCGACGACGGCGGCGATCGTGTCAAGGGGTCGTGGAGTCCTCAGGAGGACGCGACGCTGTTGAAGTTGGTGGACGAGCACGGGCCGCGCAACTGGTCCGTCATAAGCAGCGGCATTCCCGGGCGTTCCGGCAAGTCTTGCCGTCTGCGGTGGTGCAACCAGCTGAGCCCCGAGGTGCAGCACCGTCCGTTCACCCCGGCGGAGGACAAGATCATCATACAGGCGCACGCCGCTCACGGAAACAAGTGGGCCACCATCTCGCGCCTCCTCCCTGGCCGCACCGACAACGCCATCAAGAACCACTGGAACTCCACCCTCCGCCGCCGTCGCATGGCGGAGCAGTCCCCCTGCCTCTGCCTCCTCGGGGTCTCCGCCCGCCAAACGTCCCTCCTACAACGGCTTAAGCTGTGcattgaaaaagaaaacgaGGAAGAAGAGCGAGTGGCGAGCCCTGTTACGACATCGTTGACACTTTTCCCTCCCGGGGAAAACACAGAGGAAGacgaggaagagaaagagaaagaagagttTGAAGTGAACCTTAATAACAAGGTTGAGGGTCAGAGTTGCTTTATGCAGATGATGCAGCGGATGATAGCGGAAGAGGTTAGGAATTACGTGGAGAGCCTGCGCCATGGTGAGAGAGACAGCCTCTCCTTTGGGTCTGGGTTAGATCTTCGTCCAATgcttccaaaataa 708 0.5551 MIGGDDGGDRVKGSWSPQEDATLLKLVDEHGPRNWSVISSGIPGRSGKSCRLRWCNQLSPEVQHRPFTPAEDKIIIQAHAAHGNKWATISRLLPGRTDNAIKNHWNSTLRRRRMAEQSPCLCLLGVSARQTSLLQRLKLCIEKENEEEERVASPVTTSLTLFPPGENTEEDEEEKEKEEFEVNLNNKVEGQSCFMQMMQRMIAEEVRNYVESLRHGERDSLSFGSGLDLRPMLPK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3055 235 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Ssu6g3055 235 SUPERFAMILY Homeodomain-like 10 105 IPR009057 -
Ssu6g3055 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Ssu6g3055 235 PANTHER MYB PROTEIN-RELATED 9 192 - -
Ssu6g3055 235 CDD SANT 14 56 IPR001005 -
Ssu6g3055 235 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Ssu6g3055 235 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Ssu6g3055 235 Gene3D - 11 63 - -
Ssu6g3055 235 Gene3D - 66 112 - -
Ssu6g3055 235 PANTHER OS01G0850400 PROTEIN 9 192 - -
Ssu6g3055 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 58 IPR017930 -
Ssu6g3055 235 CDD SANT 66 109 IPR001005 -
Ssu6g3055 235 SMART sant 63 111 IPR001005 -
Ssu6g3055 235 SMART sant 11 60 IPR001005 -
Ssu6g3055 235 MobiDBLite consensus disorder prediction 158 177 - -
Ssu6g3055 235 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3055 Ssu-Chr6 69931882 69932614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3055 9 120 MYB Transcription Factor Family AT4G37260 71.429 2.59e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g3055 Myb_DNA-binding 3.2e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3055 6 69931882 69932614 Ssu6g3055 6 69931882 69932614 ECH