Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3054 ATGCTCACAAGCATTAGGATGGTTTCTATTGTGCACATGGAAAGTTACTACTATTCTGGCTGGCCTCTGACCACCAACGTGGCTCAATGCAACTCTGCACCAAACAGTGATCAATTATCTCCTTTTTCAGTCCCAACACAAATACTCCCTCTTGCTTCTGACCCTGCCTCTCTTCAATTTGGTGAGTTCCCTTCGTGGCCTGCACCCGTTGCAGAAGATAGAGCTGCAAATGCTTCCAAGAGCCACAGCCAAGCAGAGAAAAGGCGCAGGGACAGGATCAATGCACAGCTTGCAACTCTCAGAAAACTGATTCCCAAGTCTGATAAGATGGACAAGGCAGCATTACTAGGGAGTGTGGTAGACCATGTAAAAGATCTAAAGCGAAAAGCCATGGATGTCGGCAAAGCCATTACTGTTCCAACTGAAACTGATGAAGTAACAATTGACTATCACTCAGCTCAAGATGAAAGCTACACTAAAGTGAACATATTCAAGGAAAACATCATAATCAAAGCTTCTGTTTGCTGCGATGATCGACCAGAAGTGTTCCCTGAGCTCATCCAGGTCCTTAAAGGCTTGAGACTCACTGCAGTTAAGGCTGACATAGCCAGTGTGGGTGGCAGAATCAAAAGCATATTGGTTCTTTGCTCAAAGGATAGTGAAGAGGGTAGTGTTTGCCTTAGCACTCTCAAACAATCCCTTAAATCAGCTGTGAACAAAATTGCTTCGTTATCCGTGGCAACAAATTGTCCTACTAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCTCACCACGTACAATAA 804 0.4465 MLTSIRMVSIVHMESYYYSGWPLTTNVAQCNSAPNSDQLSPFSVPTQILPLASDPASLQFGEFPSWPAPVAEDRAANASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKRKAMDVGKAITVPTETDEVTIDYHSAQDESYTKVNIFKENIIIKASVCCDDRPEVFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSEEGSVCLSTLKQSLKSAVNKIASLSVATNCPTRSKRQRFFLPSHHVQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3054 267 PANTHER TRANSCRIPTION FACTOR BHLH30 47 265 IPR045847 GO:0003700|GO:0006355
Ssu6g3054 267 PANTHER TRANSCRIPTION FACTOR BHLH51 47 265 - -
Ssu6g3054 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 126 IPR011598 GO:0046983
Ssu6g3054 267 SMART finulus 83 132 IPR011598 GO:0046983
Ssu6g3054 267 Pfam Helix-loop-helix DNA-binding domain 80 126 IPR011598 GO:0046983
Ssu6g3054 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 129 IPR036638 GO:0046983
Ssu6g3054 267 CDD bHLH_AtAIG1_like 72 149 - -
Ssu6g3054 267 Gene3D - 71 133 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3054 Ssu-Chr6 69919841 69921349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3054 31 265 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 43.478 5.49e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g3054 HLH 8.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3054 - - gmx:100306102 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3054 6 69919841 69921349 Ssu6g3054 6 69919841 69921349 ECH
Ssu9g1612 9 52707652 52708854 Ssu6g3054 6 69919841 69921349 PCT